Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
USF1P22415 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.71
USF1P22415 AC090877.2-201ENST00000558441 1738 ntBASIC19.51■□□□□ 0.71
USF1P22415 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
USF1P22415 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
USF1P22415 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC19.51■□□□□ 0.71
USF1P22415 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
USF1P22415 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC19.51■□□□□ 0.71
USF1P22415 AL512631.2-201ENST00000604634 923 ntBASIC19.51■□□□□ 0.71
USF1P22415 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC19.51■□□□□ 0.71
USF1P22415 AC010501.1-201ENST00000606270 1962 ntBASIC19.51■□□□□ 0.71
USF1P22415 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
USF1P22415 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC19.5■□□□□ 0.71
USF1P22415 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
USF1P22415 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC19.5■□□□□ 0.71
USF1P22415 QDPR-206ENST00000508623 601 ntTSL 3 BASIC19.5■□□□□ 0.71
USF1P22415 AC133561.4-201ENST00000566112 224 ntBASIC19.5■□□□□ 0.71
USF1P22415 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC19.5■□□□□ 0.71
USF1P22415 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC19.5■□□□□ 0.71
USF1P22415 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC19.5■□□□□ 0.71
USF1P22415 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
USF1P22415 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
USF1P22415 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
USF1P22415 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
USF1P22415 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
USF1P22415 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
USF1P22415 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
USF1P22415 MIR6722-201ENST00000617286 78 ntBASIC19.49■□□□□ 0.71
USF1P22415 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC19.49■□□□□ 0.71
USF1P22415 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
USF1P22415 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
USF1P22415 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC19.49■□□□□ 0.71
USF1P22415 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
USF1P22415 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
USF1P22415 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
USF1P22415 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC19.48■□□□□ 0.71
USF1P22415 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
USF1P22415 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
USF1P22415 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC19.48■□□□□ 0.71
USF1P22415 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
USF1P22415 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
USF1P22415 AC020928.2-201ENST00000588717 2197 ntBASIC19.48■□□□□ 0.71
USF1P22415 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
USF1P22415 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
USF1P22415 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
USF1P22415 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
USF1P22415 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
USF1P22415 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC19.47■□□□□ 0.71
USF1P22415 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USF1P22415 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
USF1P22415 SNX5-217ENST00000606557 1087 ntBASIC19.47■□□□□ 0.71
USF1P22415 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
USF1P22415 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USF1P22415 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC19.47■□□□□ 0.71
USF1P22415 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USF1P22415 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USF1P22415 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USF1P22415 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC19.46■□□□□ 0.71
USF1P22415 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
USF1P22415 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USF1P22415 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USF1P22415 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
USF1P22415 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
USF1P22415 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC19.45■□□□□ 0.7
USF1P22415 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC19.45■□□□□ 0.7
USF1P22415 RASSF1-AS1-201ENST00000629828 790 ntBASIC19.45■□□□□ 0.7
USF1P22415 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC19.44■□□□□ 0.7
USF1P22415 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
USF1P22415 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
USF1P22415 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
USF1P22415 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
USF1P22415 ERN1-208ENST00000606895 2068 ntBASIC19.44■□□□□ 0.7
USF1P22415 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
USF1P22415 CLTA-206ENST00000466396 695 ntTSL 2 BASIC19.44■□□□□ 0.7
USF1P22415 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC19.44■□□□□ 0.7
USF1P22415 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
USF1P22415 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
USF1P22415 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
USF1P22415 PKM-204ENST00000449901 2526 ntTSL 2 BASIC19.44■□□□□ 0.7
USF1P22415 AC097639.1-201ENST00000565519 1891 ntBASIC19.43■□□□□ 0.7
USF1P22415 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USF1P22415 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
USF1P22415 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
USF1P22415 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
USF1P22415 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC19.43■□□□□ 0.7
USF1P22415 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC19.42■□□□□ 0.7
USF1P22415 LBH-205ENST00000407930 756 ntTSL 2 BASIC19.42■□□□□ 0.7
USF1P22415 PBX2P1-201ENST00000493219 1291 ntBASIC19.42■□□□□ 0.7
USF1P22415 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC19.42■□□□□ 0.7
USF1P22415 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
USF1P22415 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
USF1P22415 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC19.42■□□□□ 0.7
USF1P22415 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
USF1P22415 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USF1P22415 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USF1P22415 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC19.41■□□□□ 0.7
USF1P22415 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
USF1P22415 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USF1P22415 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
USF1P22415 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 105.2 ms