Protein–RNA interactions for Protein: P09661

SNRPA1, U2 small nuclear ribonucleoprotein A', humanhuman

Known RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPA1P09661 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
SNRPA1P09661 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC29.76■■■□□ 2.35
SNRPA1P09661 MIR935-201ENST00000401179 91 ntBASIC29.76■■■□□ 2.35
SNRPA1P09661 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC29.76■■■□□ 2.35
SNRPA1P09661 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC29.76■■■□□ 2.35
SNRPA1P09661 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC29.76■■■□□ 2.35
SNRPA1P09661 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC29.76■■■□□ 2.35
SNRPA1P09661 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC29.76■■■□□ 2.35
SNRPA1P09661 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
SNRPA1P09661 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC29.75■■■□□ 2.35
SNRPA1P09661 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC29.75■■■□□ 2.35
SNRPA1P09661 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC29.75■■■□□ 2.35
SNRPA1P09661 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC29.75■■■□□ 2.35
SNRPA1P09661 AC005703.6-201ENST00000623265 1329 ntBASIC29.74■■■□□ 2.35
SNRPA1P09661 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC29.74■■■□□ 2.35
SNRPA1P09661 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC29.74■■■□□ 2.35
SNRPA1P09661 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC29.74■■■□□ 2.35
SNRPA1P09661 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC29.74■■■□□ 2.35
SNRPA1P09661 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC29.73■■■□□ 2.35
SNRPA1P09661 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC29.72■■■□□ 2.35
SNRPA1P09661 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC29.72■■■□□ 2.35
SNRPA1P09661 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC29.72■■■□□ 2.35
SNRPA1P09661 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC29.72■■■□□ 2.35
SNRPA1P09661 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
SNRPA1P09661 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC29.71■■■□□ 2.35
SNRPA1P09661 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
SNRPA1P09661 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC29.71■■■□□ 2.35
SNRPA1P09661 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
SNRPA1P09661 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
SNRPA1P09661 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC29.71■■■□□ 2.35
SNRPA1P09661 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC29.7■■■□□ 2.35
SNRPA1P09661 STK32C-205ENST00000456004 607 ntTSL 2 BASIC29.7■■■□□ 2.35
SNRPA1P09661 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC29.7■■■□□ 2.34
SNRPA1P09661 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC29.7■■■□□ 2.34
SNRPA1P09661 LSR-205ENST00000427250 1606 ntTSL 2 BASIC29.7■■■□□ 2.34
SNRPA1P09661 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC29.7■■■□□ 2.34
SNRPA1P09661 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC29.69■■■□□ 2.34
SNRPA1P09661 REST-206ENST00000612429 1376 ntTSL 5 BASIC29.69■■■□□ 2.34
SNRPA1P09661 REST-207ENST00000616975 1370 ntTSL 5 BASIC29.69■■■□□ 2.34
SNRPA1P09661 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC29.69■■■□□ 2.34
SNRPA1P09661 SRD5A1P1-201ENST00000442297 786 ntBASIC29.69■■■□□ 2.34
SNRPA1P09661 AC106739.1-201ENST00000617035 715 ntBASIC29.69■■■□□ 2.34
SNRPA1P09661 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC29.69■■■□□ 2.34
SNRPA1P09661 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC29.69■■■□□ 2.34
SNRPA1P09661 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC29.69■■■□□ 2.34
SNRPA1P09661 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC29.68■■■□□ 2.34
SNRPA1P09661 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
SNRPA1P09661 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC29.68■■■□□ 2.34
SNRPA1P09661 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC29.68■■■□□ 2.34
SNRPA1P09661 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC29.68■■■□□ 2.34
SNRPA1P09661 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
SNRPA1P09661 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC29.68■■■□□ 2.34
SNRPA1P09661 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC29.68■■■□□ 2.34
SNRPA1P09661 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC29.67■■■□□ 2.34
SNRPA1P09661 PBX2P1-201ENST00000493219 1291 ntBASIC29.67■■■□□ 2.34
SNRPA1P09661 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC29.67■■■□□ 2.34
SNRPA1P09661 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
SNRPA1P09661 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC29.67■■■□□ 2.34
SNRPA1P09661 GATM-206ENST00000558336 1522 ntTSL 2 BASIC29.66■■■□□ 2.34
SNRPA1P09661 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
SNRPA1P09661 UNC93B3-201ENST00000308076 687 ntBASIC29.66■■■□□ 2.34
SNRPA1P09661 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC29.66■■■□□ 2.34
SNRPA1P09661 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC29.66■■■□□ 2.34
SNRPA1P09661 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC29.66■■■□□ 2.34
SNRPA1P09661 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
SNRPA1P09661 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
SNRPA1P09661 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC29.65■■■□□ 2.34
SNRPA1P09661 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC29.65■■■□□ 2.34
SNRPA1P09661 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC29.65■■■□□ 2.34
SNRPA1P09661 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC29.65■■■□□ 2.34
SNRPA1P09661 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC29.65■■■□□ 2.34
SNRPA1P09661 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC29.64■■■□□ 2.34
SNRPA1P09661 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC29.64■■■□□ 2.34
SNRPA1P09661 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC29.64■■■□□ 2.34
SNRPA1P09661 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC29.63■■■□□ 2.33
SNRPA1P09661 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC29.63■■■□□ 2.33
SNRPA1P09661 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC29.63■■■□□ 2.33
SNRPA1P09661 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC29.63■■■□□ 2.33
SNRPA1P09661 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC29.63■■■□□ 2.33
SNRPA1P09661 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC29.63■■■□□ 2.33
SNRPA1P09661 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC29.63■■■□□ 2.33
SNRPA1P09661 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC29.63■■■□□ 2.33
SNRPA1P09661 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC29.63■■■□□ 2.33
SNRPA1P09661 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
SNRPA1P09661 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC29.62■■■□□ 2.33
SNRPA1P09661 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC29.62■■■□□ 2.33
SNRPA1P09661 AL022069.1-201ENST00000568025 1636 ntBASIC29.62■■■□□ 2.33
SNRPA1P09661 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
SNRPA1P09661 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
SNRPA1P09661 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC29.61■■■□□ 2.33
SNRPA1P09661 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
SNRPA1P09661 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
SNRPA1P09661 AL136162.1-201ENST00000607711 1078 ntBASIC29.61■■■□□ 2.33
SNRPA1P09661 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
SNRPA1P09661 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC29.61■■■□□ 2.33
SNRPA1P09661 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
SNRPA1P09661 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
SNRPA1P09661 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC29.61■■■□□ 2.33
SNRPA1P09661 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
SNRPA1P09661 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
Retrieved 100 of 98,524 protein–RNA pairs in 14.9 ms