Protein–RNA interactions for Protein: O43542

XRCC3, DNA repair protein XRCC3, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC3O43542 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
XRCC3O43542 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
XRCC3O43542 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
XRCC3O43542 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
XRCC3O43542 LINC00565-201ENST00000562710 2331 ntBASIC19.77■□□□□ 0.76
XRCC3O43542 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
XRCC3O43542 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC19.77■□□□□ 0.75
XRCC3O43542 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.75
XRCC3O43542 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
XRCC3O43542 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
XRCC3O43542 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
XRCC3O43542 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC19.76■□□□□ 0.75
XRCC3O43542 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC19.76■□□□□ 0.75
XRCC3O43542 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
XRCC3O43542 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
XRCC3O43542 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC19.75■□□□□ 0.75
XRCC3O43542 ANOS2P-203ENST00000472227 1816 ntBASIC19.75■□□□□ 0.75
XRCC3O43542 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
XRCC3O43542 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC19.75■□□□□ 0.75
XRCC3O43542 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
XRCC3O43542 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
XRCC3O43542 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
XRCC3O43542 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
XRCC3O43542 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
XRCC3O43542 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
XRCC3O43542 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC19.75■□□□□ 0.75
XRCC3O43542 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
XRCC3O43542 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
XRCC3O43542 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
XRCC3O43542 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
XRCC3O43542 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
XRCC3O43542 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
XRCC3O43542 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
XRCC3O43542 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC19.74■□□□□ 0.75
XRCC3O43542 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
XRCC3O43542 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
XRCC3O43542 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
XRCC3O43542 AGPS-202ENST00000409888 815 ntTSL 4 BASIC19.74■□□□□ 0.75
XRCC3O43542 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC19.74■□□□□ 0.75
XRCC3O43542 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
XRCC3O43542 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
XRCC3O43542 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
XRCC3O43542 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
XRCC3O43542 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC19.74■□□□□ 0.75
XRCC3O43542 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
XRCC3O43542 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
XRCC3O43542 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
XRCC3O43542 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
XRCC3O43542 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
XRCC3O43542 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
XRCC3O43542 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
XRCC3O43542 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC19.73■□□□□ 0.75
XRCC3O43542 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
XRCC3O43542 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC19.73■□□□□ 0.75
XRCC3O43542 DUSP8P3-201ENST00000399571 1760 ntBASIC19.72■□□□□ 0.75
XRCC3O43542 FOXO3B-201ENST00000395675 1928 ntBASIC19.72■□□□□ 0.75
XRCC3O43542 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC19.72■□□□□ 0.75
XRCC3O43542 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
XRCC3O43542 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
XRCC3O43542 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
XRCC3O43542 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
XRCC3O43542 AL157400.5-201ENST00000507624 621 ntBASIC19.72■□□□□ 0.75
XRCC3O43542 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
XRCC3O43542 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
XRCC3O43542 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC19.72■□□□□ 0.75
XRCC3O43542 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC19.71■□□□□ 0.75
XRCC3O43542 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
XRCC3O43542 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
XRCC3O43542 AC092068.2-201ENST00000590491 1708 ntBASIC19.71■□□□□ 0.75
XRCC3O43542 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
XRCC3O43542 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC19.71■□□□□ 0.75
XRCC3O43542 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
XRCC3O43542 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
XRCC3O43542 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC19.71■□□□□ 0.75
XRCC3O43542 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
XRCC3O43542 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
XRCC3O43542 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC19.71■□□□□ 0.75
XRCC3O43542 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC19.7■□□□□ 0.74
XRCC3O43542 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
XRCC3O43542 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC19.7■□□□□ 0.74
XRCC3O43542 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
XRCC3O43542 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC19.7■□□□□ 0.74
XRCC3O43542 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC19.7■□□□□ 0.74
XRCC3O43542 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
XRCC3O43542 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
XRCC3O43542 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
XRCC3O43542 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
XRCC3O43542 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
XRCC3O43542 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
XRCC3O43542 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
XRCC3O43542 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
XRCC3O43542 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
XRCC3O43542 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
XRCC3O43542 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
XRCC3O43542 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC19.69■□□□□ 0.74
XRCC3O43542 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC19.69■□□□□ 0.74
XRCC3O43542 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
XRCC3O43542 C1orf229-201ENST00000623686 2258 ntBASIC19.69■□□□□ 0.74
XRCC3O43542 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
XRCC3O43542 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC19.69■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 14.2 ms