Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
CBX4O00257 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC23.65■■□□□ 1.38
CBX4O00257 UNC93B8-201ENST00000511903 705 ntBASIC23.65■■□□□ 1.38
CBX4O00257 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC23.65■■□□□ 1.38
CBX4O00257 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC23.65■■□□□ 1.38
CBX4O00257 HLA-L-211ENST00000482052 1765 ntBASIC23.65■■□□□ 1.38
CBX4O00257 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC23.65■■□□□ 1.38
CBX4O00257 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
CBX4O00257 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC23.64■■□□□ 1.38
CBX4O00257 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
CBX4O00257 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC23.64■■□□□ 1.37
CBX4O00257 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC23.64■■□□□ 1.37
CBX4O00257 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC23.64■■□□□ 1.37
CBX4O00257 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
CBX4O00257 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC23.64■■□□□ 1.37
CBX4O00257 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC23.63■■□□□ 1.37
CBX4O00257 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC23.63■■□□□ 1.37
CBX4O00257 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
CBX4O00257 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC23.62■■□□□ 1.37
CBX4O00257 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC23.62■■□□□ 1.37
CBX4O00257 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
CBX4O00257 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC23.62■■□□□ 1.37
CBX4O00257 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
CBX4O00257 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
CBX4O00257 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC23.62■■□□□ 1.37
CBX4O00257 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC23.62■■□□□ 1.37
CBX4O00257 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC23.62■■□□□ 1.37
CBX4O00257 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC23.62■■□□□ 1.37
CBX4O00257 CLTA-210ENST00000540080 989 ntTSL 2 BASIC23.62■■□□□ 1.37
CBX4O00257 GRAMD4P7-201ENST00000578182 1232 ntBASIC23.62■■□□□ 1.37
CBX4O00257 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
CBX4O00257 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC23.61■■□□□ 1.37
CBX4O00257 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC23.61■■□□□ 1.37
CBX4O00257 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC23.61■■□□□ 1.37
CBX4O00257 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC23.61■■□□□ 1.37
CBX4O00257 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
CBX4O00257 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC23.6■■□□□ 1.37
CBX4O00257 AC135731.1-201ENST00000569415 2548 ntBASIC23.6■■□□□ 1.37
CBX4O00257 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC23.6■■□□□ 1.37
CBX4O00257 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC23.6■■□□□ 1.37
CBX4O00257 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC23.6■■□□□ 1.37
CBX4O00257 KRT16P3-201ENST00000439127 1283 ntBASIC23.6■■□□□ 1.37
CBX4O00257 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.37
CBX4O00257 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC23.6■■□□□ 1.37
CBX4O00257 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC23.6■■□□□ 1.37
CBX4O00257 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC23.6■■□□□ 1.37
CBX4O00257 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC23.59■■□□□ 1.37
CBX4O00257 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC23.59■■□□□ 1.37
CBX4O00257 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC23.59■■□□□ 1.37
CBX4O00257 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC23.59■■□□□ 1.37
CBX4O00257 MTDHP2-201ENST00000601468 714 ntBASIC23.59■■□□□ 1.37
CBX4O00257 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
CBX4O00257 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC23.59■■□□□ 1.37
CBX4O00257 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC23.59■■□□□ 1.37
CBX4O00257 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
CBX4O00257 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
CBX4O00257 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
CBX4O00257 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
CBX4O00257 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
CBX4O00257 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC23.58■■□□□ 1.37
CBX4O00257 SNX5-217ENST00000606557 1087 ntBASIC23.58■■□□□ 1.37
CBX4O00257 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
CBX4O00257 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC23.57■■□□□ 1.36
CBX4O00257 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
CBX4O00257 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC23.57■■□□□ 1.36
CBX4O00257 AC010997.5-201ENST00000609182 354 ntBASIC23.57■■□□□ 1.36
CBX4O00257 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC23.57■■□□□ 1.36
CBX4O00257 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC23.57■■□□□ 1.36
CBX4O00257 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC23.56■■□□□ 1.36
CBX4O00257 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC23.56■■□□□ 1.36
CBX4O00257 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC23.56■■□□□ 1.36
CBX4O00257 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
CBX4O00257 AC131274.2-201ENST00000580697 1507 ntBASIC23.56■■□□□ 1.36
CBX4O00257 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC23.56■■□□□ 1.36
CBX4O00257 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC23.56■■□□□ 1.36
CBX4O00257 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC23.56■■□□□ 1.36
CBX4O00257 LSM7-203ENST00000585409 512 ntTSL 2 BASIC23.56■■□□□ 1.36
CBX4O00257 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
CBX4O00257 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
CBX4O00257 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC23.56■■□□□ 1.36
CBX4O00257 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
CBX4O00257 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
CBX4O00257 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
CBX4O00257 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
CBX4O00257 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
CBX4O00257 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
CBX4O00257 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
CBX4O00257 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
CBX4O00257 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC23.55■■□□□ 1.36
CBX4O00257 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC23.55■■□□□ 1.36
CBX4O00257 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC23.55■■□□□ 1.36
CBX4O00257 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
CBX4O00257 TMEM202-AS1-202ENST00000565181 2325 ntBASIC23.55■■□□□ 1.36
CBX4O00257 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
CBX4O00257 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC23.54■■□□□ 1.36
CBX4O00257 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC23.54■■□□□ 1.36
CBX4O00257 AC008406.3-201ENST00000620001 1374 ntBASIC23.54■■□□□ 1.36
CBX4O00257 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC23.54■■□□□ 1.36
CBX4O00257 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC23.54■■□□□ 1.36
CBX4O00257 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC23.54■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 77.7 ms