Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
CTDP1Q9Y5B0 CICP13-201ENST00000422015 2789 ntBASIC17.7■□□□□ 0.42
CTDP1Q9Y5B0 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CTDP1Q9Y5B0 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
CTDP1Q9Y5B0 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CTDP1Q9Y5B0 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC17.7■□□□□ 0.42
CTDP1Q9Y5B0 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
CTDP1Q9Y5B0 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC17.7■□□□□ 0.42
CTDP1Q9Y5B0 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CTDP1Q9Y5B0 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CTDP1Q9Y5B0 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CTDP1Q9Y5B0 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
CTDP1Q9Y5B0 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
CTDP1Q9Y5B0 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CTDP1Q9Y5B0 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CTDP1Q9Y5B0 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CTDP1Q9Y5B0 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CTDP1Q9Y5B0 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CTDP1Q9Y5B0 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC17.69■□□□□ 0.42
CTDP1Q9Y5B0 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC17.69■□□□□ 0.42
CTDP1Q9Y5B0 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC17.69■□□□□ 0.42
CTDP1Q9Y5B0 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CTDP1Q9Y5B0 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC17.69■□□□□ 0.42
CTDP1Q9Y5B0 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
CTDP1Q9Y5B0 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CTDP1Q9Y5B0 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC17.69■□□□□ 0.42
CTDP1Q9Y5B0 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC17.69■□□□□ 0.42
CTDP1Q9Y5B0 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
CTDP1Q9Y5B0 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CTDP1Q9Y5B0 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CTDP1Q9Y5B0 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CTDP1Q9Y5B0 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CTDP1Q9Y5B0 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC17.69■□□□□ 0.42
CTDP1Q9Y5B0 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC17.69■□□□□ 0.42
CTDP1Q9Y5B0 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC17.69■□□□□ 0.42
CTDP1Q9Y5B0 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC17.69■□□□□ 0.42
CTDP1Q9Y5B0 HNRNPA1P48-202ENST00000565308 961 ntBASIC17.69■□□□□ 0.42
CTDP1Q9Y5B0 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC17.69■□□□□ 0.42
CTDP1Q9Y5B0 MIR4741-201ENST00000579822 90 ntBASIC17.69■□□□□ 0.42
CTDP1Q9Y5B0 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC17.69■□□□□ 0.42
CTDP1Q9Y5B0 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CTDP1Q9Y5B0 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
CTDP1Q9Y5B0 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC17.69■□□□□ 0.42
CTDP1Q9Y5B0 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
CTDP1Q9Y5B0 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CTDP1Q9Y5B0 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CTDP1Q9Y5B0 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CTDP1Q9Y5B0 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC17.69■□□□□ 0.42
CTDP1Q9Y5B0 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CTDP1Q9Y5B0 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC17.69■□□□□ 0.42
CTDP1Q9Y5B0 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
CTDP1Q9Y5B0 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC17.68■□□□□ 0.42
CTDP1Q9Y5B0 PCDHA11-201ENST00000398640 6115 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
CTDP1Q9Y5B0 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CTDP1Q9Y5B0 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CTDP1Q9Y5B0 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC17.68■□□□□ 0.42
CTDP1Q9Y5B0 AL365209.1-201ENST00000624418 6473 ntBASIC17.68■□□□□ 0.42
CTDP1Q9Y5B0 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CTDP1Q9Y5B0 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
CTDP1Q9Y5B0 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
CTDP1Q9Y5B0 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CTDP1Q9Y5B0 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
CTDP1Q9Y5B0 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CTDP1Q9Y5B0 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
CTDP1Q9Y5B0 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CTDP1Q9Y5B0 MIR326-201ENST00000362220 95 ntBASIC17.68■□□□□ 0.42
CTDP1Q9Y5B0 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
CTDP1Q9Y5B0 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC17.68■□□□□ 0.42
CTDP1Q9Y5B0 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC17.68■□□□□ 0.42
CTDP1Q9Y5B0 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
CTDP1Q9Y5B0 BTBD6P1-201ENST00000412176 1267 ntBASIC17.68■□□□□ 0.42
CTDP1Q9Y5B0 CD8B2-202ENST00000417670 633 ntBASIC17.68■□□□□ 0.42
CTDP1Q9Y5B0 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC17.68■□□□□ 0.42
CTDP1Q9Y5B0 MST1L-201ENST00000442552 2185 ntBASIC17.68■□□□□ 0.42
CTDP1Q9Y5B0 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC17.68■□□□□ 0.42
CTDP1Q9Y5B0 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC17.68■□□□□ 0.42
CTDP1Q9Y5B0 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CTDP1Q9Y5B0 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC17.68■□□□□ 0.42
CTDP1Q9Y5B0 PRSS30P-206ENST00000641773 873 ntBASIC17.68■□□□□ 0.42
CTDP1Q9Y5B0 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
CTDP1Q9Y5B0 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CTDP1Q9Y5B0 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC17.68■□□□□ 0.42
CTDP1Q9Y5B0 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CTDP1Q9Y5B0 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CTDP1Q9Y5B0 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CTDP1Q9Y5B0 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC17.68■□□□□ 0.42
CTDP1Q9Y5B0 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC17.68■□□□□ 0.42
CTDP1Q9Y5B0 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CTDP1Q9Y5B0 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC17.68■□□□□ 0.42
CTDP1Q9Y5B0 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
CTDP1Q9Y5B0 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CTDP1Q9Y5B0 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC17.68■□□□□ 0.42
CTDP1Q9Y5B0 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
CTDP1Q9Y5B0 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CTDP1Q9Y5B0 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC17.67■□□□□ 0.42
CTDP1Q9Y5B0 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
CTDP1Q9Y5B0 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
CTDP1Q9Y5B0 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CTDP1Q9Y5B0 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CTDP1Q9Y5B0 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms