Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
ATG4BQ9Y4P1 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
ATG4BQ9Y4P1 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
ATG4BQ9Y4P1 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC14.52□□□□□ -0.08
ATG4BQ9Y4P1 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
ATG4BQ9Y4P1 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
ATG4BQ9Y4P1 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC14.52□□□□□ -0.08
ATG4BQ9Y4P1 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC14.52□□□□□ -0.08
ATG4BQ9Y4P1 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC14.52□□□□□ -0.08
ATG4BQ9Y4P1 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
ATG4BQ9Y4P1 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.08
ATG4BQ9Y4P1 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
ATG4BQ9Y4P1 COPE-202ENST00000349893 948 ntTSL 2 BASIC14.52□□□□□ -0.09
ATG4BQ9Y4P1 PNKD-204ENST00000436005 978 ntTSL 5 BASIC14.52□□□□□ -0.09
ATG4BQ9Y4P1 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC14.52□□□□□ -0.09
ATG4BQ9Y4P1 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC14.52□□□□□ -0.09
ATG4BQ9Y4P1 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
ATG4BQ9Y4P1 HNRNPA1P13-201ENST00000510646 963 ntBASIC14.52□□□□□ -0.09
ATG4BQ9Y4P1 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC14.52□□□□□ -0.09
ATG4BQ9Y4P1 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC14.52□□□□□ -0.09
ATG4BQ9Y4P1 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC14.52□□□□□ -0.09
ATG4BQ9Y4P1 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC14.52□□□□□ -0.09
ATG4BQ9Y4P1 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC14.52□□□□□ -0.09
ATG4BQ9Y4P1 AC124283.3-201ENST00000570869 594 ntBASIC14.52□□□□□ -0.09
ATG4BQ9Y4P1 AC140912.1-201ENST00000577171 1054 ntBASIC14.52□□□□□ -0.09
ATG4BQ9Y4P1 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC14.52□□□□□ -0.09
ATG4BQ9Y4P1 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC14.52□□□□□ -0.09
ATG4BQ9Y4P1 SERF2-217ENST00000630046 862 ntTSL 5 BASIC14.52□□□□□ -0.09
ATG4BQ9Y4P1 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC14.52□□□□□ -0.09
ATG4BQ9Y4P1 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
ATG4BQ9Y4P1 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC14.52□□□□□ -0.09
ATG4BQ9Y4P1 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
ATG4BQ9Y4P1 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
ATG4BQ9Y4P1 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC14.52□□□□□ -0.09
ATG4BQ9Y4P1 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC14.52□□□□□ -0.09
ATG4BQ9Y4P1 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
ATG4BQ9Y4P1 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
ATG4BQ9Y4P1 MARS-233ENST00000628866 2583 ntTSL 5 BASIC14.52□□□□□ -0.09
ATG4BQ9Y4P1 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC14.52□□□□□ -0.09
ATG4BQ9Y4P1 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
ATG4BQ9Y4P1 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC14.52□□□□□ -0.09
ATG4BQ9Y4P1 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
ATG4BQ9Y4P1 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
ATG4BQ9Y4P1 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
ATG4BQ9Y4P1 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
ATG4BQ9Y4P1 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
ATG4BQ9Y4P1 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
ATG4BQ9Y4P1 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
ATG4BQ9Y4P1 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC14.51□□□□□ -0.09
ATG4BQ9Y4P1 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
ATG4BQ9Y4P1 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC14.51□□□□□ -0.09
ATG4BQ9Y4P1 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
ATG4BQ9Y4P1 ACE3P-201ENST00000423435 1973 ntBASIC14.51□□□□□ -0.09
ATG4BQ9Y4P1 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC14.51□□□□□ -0.09
ATG4BQ9Y4P1 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC14.51□□□□□ -0.09
ATG4BQ9Y4P1 AC093525.8-201ENST00000624099 1342 ntBASIC14.51□□□□□ -0.09
ATG4BQ9Y4P1 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
ATG4BQ9Y4P1 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
ATG4BQ9Y4P1 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
ATG4BQ9Y4P1 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
ATG4BQ9Y4P1 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
ATG4BQ9Y4P1 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC14.51□□□□□ -0.09
ATG4BQ9Y4P1 C1QBPP1-201ENST00000400117 770 ntBASIC14.51□□□□□ -0.09
ATG4BQ9Y4P1 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC14.51□□□□□ -0.09
ATG4BQ9Y4P1 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC14.51□□□□□ -0.09
ATG4BQ9Y4P1 AP005018.1-201ENST00000525475 301 ntBASIC14.51□□□□□ -0.09
ATG4BQ9Y4P1 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC14.51□□□□□ -0.09
ATG4BQ9Y4P1 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC14.51□□□□□ -0.09
ATG4BQ9Y4P1 WASH4P-201ENST00000564273 1246 ntBASIC14.51□□□□□ -0.09
ATG4BQ9Y4P1 TP53TG3HP-202ENST00000569755 579 ntBASIC14.51□□□□□ -0.09
ATG4BQ9Y4P1 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC14.51□□□□□ -0.09
ATG4BQ9Y4P1 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC14.51□□□□□ -0.09
ATG4BQ9Y4P1 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC14.51□□□□□ -0.09
ATG4BQ9Y4P1 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC14.51□□□□□ -0.09
ATG4BQ9Y4P1 AC025048.6-201ENST00000634326 1161 ntBASIC14.51□□□□□ -0.09
ATG4BQ9Y4P1 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC14.51□□□□□ -0.09
ATG4BQ9Y4P1 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
ATG4BQ9Y4P1 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
ATG4BQ9Y4P1 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
ATG4BQ9Y4P1 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
ATG4BQ9Y4P1 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
ATG4BQ9Y4P1 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC14.51□□□□□ -0.09
ATG4BQ9Y4P1 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
ATG4BQ9Y4P1 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
ATG4BQ9Y4P1 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC14.51□□□□□ -0.09
ATG4BQ9Y4P1 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
ATG4BQ9Y4P1 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
ATG4BQ9Y4P1 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
ATG4BQ9Y4P1 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC14.51□□□□□ -0.09
ATG4BQ9Y4P1 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC14.51□□□□□ -0.09
ATG4BQ9Y4P1 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
ATG4BQ9Y4P1 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC14.5□□□□□ -0.09
ATG4BQ9Y4P1 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC14.5□□□□□ -0.09
ATG4BQ9Y4P1 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
ATG4BQ9Y4P1 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
ATG4BQ9Y4P1 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
ATG4BQ9Y4P1 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
ATG4BQ9Y4P1 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
ATG4BQ9Y4P1 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
ATG4BQ9Y4P1 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 313.1 ms