Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
LIMA1Q9UHB6 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC16.73■□□□□ 0.27
LIMA1Q9UHB6 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
LIMA1Q9UHB6 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
LIMA1Q9UHB6 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
LIMA1Q9UHB6 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
LIMA1Q9UHB6 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
LIMA1Q9UHB6 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC16.73■□□□□ 0.27
LIMA1Q9UHB6 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
LIMA1Q9UHB6 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC16.73■□□□□ 0.27
LIMA1Q9UHB6 AC041040.2-201ENST00000622926 2899 ntBASIC16.73■□□□□ 0.27
LIMA1Q9UHB6 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
LIMA1Q9UHB6 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
LIMA1Q9UHB6 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
LIMA1Q9UHB6 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
LIMA1Q9UHB6 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
LIMA1Q9UHB6 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
LIMA1Q9UHB6 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
LIMA1Q9UHB6 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LIMA1Q9UHB6 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
LIMA1Q9UHB6 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC16.72■□□□□ 0.27
LIMA1Q9UHB6 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC16.72■□□□□ 0.27
LIMA1Q9UHB6 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
LIMA1Q9UHB6 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
LIMA1Q9UHB6 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
LIMA1Q9UHB6 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC16.72■□□□□ 0.27
LIMA1Q9UHB6 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
LIMA1Q9UHB6 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LIMA1Q9UHB6 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC16.72■□□□□ 0.27
LIMA1Q9UHB6 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
LIMA1Q9UHB6 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC16.72■□□□□ 0.27
LIMA1Q9UHB6 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LIMA1Q9UHB6 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
LIMA1Q9UHB6 PKIG-203ENST00000372887 769 ntTSL 3 BASIC16.72■□□□□ 0.27
LIMA1Q9UHB6 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
LIMA1Q9UHB6 CNN2P2-201ENST00000443536 909 ntBASIC16.72■□□□□ 0.27
LIMA1Q9UHB6 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC16.72■□□□□ 0.27
LIMA1Q9UHB6 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC16.72■□□□□ 0.27
LIMA1Q9UHB6 CNN2P3-201ENST00000450201 906 ntBASIC16.72■□□□□ 0.27
LIMA1Q9UHB6 TPT1P11-201ENST00000458482 498 ntBASIC16.72■□□□□ 0.27
LIMA1Q9UHB6 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC16.72■□□□□ 0.27
LIMA1Q9UHB6 INO80C-210ENST00000590757 595 ntTSL 2 BASIC16.72■□□□□ 0.27
LIMA1Q9UHB6 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC16.72■□□□□ 0.27
LIMA1Q9UHB6 AL391069.4-201ENST00000609583 481 ntBASIC16.72■□□□□ 0.27
LIMA1Q9UHB6 5S_rRNA.22-201ENST00000614916 106 ntBASIC16.72■□□□□ 0.27
LIMA1Q9UHB6 AL136317.3-201ENST00000618497 906 ntBASIC16.72■□□□□ 0.27
LIMA1Q9UHB6 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
LIMA1Q9UHB6 RAB34-223ENST00000636154 730 ntTSL 2 BASIC16.72■□□□□ 0.27
LIMA1Q9UHB6 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC16.72■□□□□ 0.27
LIMA1Q9UHB6 AC134684.3-201ENST00000641758 218 ntBASIC16.72■□□□□ 0.27
LIMA1Q9UHB6 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC16.72■□□□□ 0.27
LIMA1Q9UHB6 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
LIMA1Q9UHB6 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LIMA1Q9UHB6 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LIMA1Q9UHB6 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LIMA1Q9UHB6 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
LIMA1Q9UHB6 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LIMA1Q9UHB6 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LIMA1Q9UHB6 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LIMA1Q9UHB6 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
LIMA1Q9UHB6 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LIMA1Q9UHB6 PES1-204ENST00000402284 2144 ntTSL 5 BASIC16.72■□□□□ 0.27
LIMA1Q9UHB6 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC16.72■□□□□ 0.27
LIMA1Q9UHB6 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC16.72■□□□□ 0.27
LIMA1Q9UHB6 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
LIMA1Q9UHB6 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
LIMA1Q9UHB6 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
LIMA1Q9UHB6 AC006504.5-208ENST00000588784 2401 ntBASIC16.71■□□□□ 0.27
LIMA1Q9UHB6 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
LIMA1Q9UHB6 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
LIMA1Q9UHB6 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
LIMA1Q9UHB6 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LIMA1Q9UHB6 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC16.71■□□□□ 0.27
LIMA1Q9UHB6 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC16.71■□□□□ 0.27
LIMA1Q9UHB6 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LIMA1Q9UHB6 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC16.71■□□□□ 0.27
LIMA1Q9UHB6 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
LIMA1Q9UHB6 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LIMA1Q9UHB6 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LIMA1Q9UHB6 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LIMA1Q9UHB6 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
LIMA1Q9UHB6 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LIMA1Q9UHB6 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
LIMA1Q9UHB6 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
LIMA1Q9UHB6 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC16.71■□□□□ 0.27
LIMA1Q9UHB6 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC16.71■□□□□ 0.27
LIMA1Q9UHB6 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC16.71■□□□□ 0.27
LIMA1Q9UHB6 AC027369.6-201ENST00000525520 931 ntBASIC16.71■□□□□ 0.27
LIMA1Q9UHB6 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC16.71■□□□□ 0.27
LIMA1Q9UHB6 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LIMA1Q9UHB6 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC16.71■□□□□ 0.27
LIMA1Q9UHB6 MPI-209ENST00000564003 1195 ntTSL 2 BASIC16.71■□□□□ 0.27
LIMA1Q9UHB6 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC16.71■□□□□ 0.27
LIMA1Q9UHB6 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC16.71■□□□□ 0.27
LIMA1Q9UHB6 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC16.71■□□□□ 0.27
LIMA1Q9UHB6 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
LIMA1Q9UHB6 AL158212.4-201ENST00000624062 1286 ntBASIC16.71■□□□□ 0.27
LIMA1Q9UHB6 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
LIMA1Q9UHB6 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
LIMA1Q9UHB6 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC16.71■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms