Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
SMC4Q9NTJ3 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC19.65■□□□□ 0.74
SMC4Q9NTJ3 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SMC4Q9NTJ3 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SMC4Q9NTJ3 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SMC4Q9NTJ3 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SMC4Q9NTJ3 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SMC4Q9NTJ3 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC19.65■□□□□ 0.74
SMC4Q9NTJ3 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SMC4Q9NTJ3 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SMC4Q9NTJ3 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SMC4Q9NTJ3 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
SMC4Q9NTJ3 PAM16-204ENST00000571941 674 ntTSL 3 BASIC19.65■□□□□ 0.74
SMC4Q9NTJ3 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC19.65■□□□□ 0.74
SMC4Q9NTJ3 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC19.65■□□□□ 0.74
SMC4Q9NTJ3 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
SMC4Q9NTJ3 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
SMC4Q9NTJ3 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC19.65■□□□□ 0.74
SMC4Q9NTJ3 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC19.65■□□□□ 0.74
SMC4Q9NTJ3 AL360270.3-201ENST00000609118 1348 ntBASIC19.65■□□□□ 0.74
SMC4Q9NTJ3 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC19.65■□□□□ 0.74
SMC4Q9NTJ3 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC19.65■□□□□ 0.74
SMC4Q9NTJ3 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SMC4Q9NTJ3 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC19.65■□□□□ 0.74
SMC4Q9NTJ3 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC19.65■□□□□ 0.74
SMC4Q9NTJ3 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SMC4Q9NTJ3 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
SMC4Q9NTJ3 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SMC4Q9NTJ3 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
SMC4Q9NTJ3 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
SMC4Q9NTJ3 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
SMC4Q9NTJ3 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
SMC4Q9NTJ3 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
SMC4Q9NTJ3 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
SMC4Q9NTJ3 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
SMC4Q9NTJ3 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
SMC4Q9NTJ3 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
SMC4Q9NTJ3 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
SMC4Q9NTJ3 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
SMC4Q9NTJ3 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SMC4Q9NTJ3 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC19.64■□□□□ 0.73
SMC4Q9NTJ3 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC19.64■□□□□ 0.73
SMC4Q9NTJ3 LHX6-205ENST00000464484 666 ntTSL 2 BASIC19.64■□□□□ 0.73
SMC4Q9NTJ3 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC19.64■□□□□ 0.73
SMC4Q9NTJ3 IFT20-206ENST00000578122 834 ntTSL 2 BASIC19.64■□□□□ 0.73
SMC4Q9NTJ3 IFT20-208ENST00000578985 831 ntTSL 3 BASIC19.64■□□□□ 0.73
SMC4Q9NTJ3 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC19.64■□□□□ 0.73
SMC4Q9NTJ3 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC19.64■□□□□ 0.73
SMC4Q9NTJ3 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
SMC4Q9NTJ3 BX539320.1-201ENST00000623759 877 ntBASIC19.64■□□□□ 0.73
SMC4Q9NTJ3 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SMC4Q9NTJ3 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SMC4Q9NTJ3 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC19.64■□□□□ 0.73
SMC4Q9NTJ3 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SMC4Q9NTJ3 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC19.64■□□□□ 0.73
SMC4Q9NTJ3 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
SMC4Q9NTJ3 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
SMC4Q9NTJ3 GPI-205ENST00000586425 1799 ntTSL 5 BASIC19.64■□□□□ 0.73
SMC4Q9NTJ3 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SMC4Q9NTJ3 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC19.64■□□□□ 0.73
SMC4Q9NTJ3 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SMC4Q9NTJ3 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SMC4Q9NTJ3 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC19.64■□□□□ 0.73
SMC4Q9NTJ3 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SMC4Q9NTJ3 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SMC4Q9NTJ3 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
SMC4Q9NTJ3 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
SMC4Q9NTJ3 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC19.63■□□□□ 0.73
SMC4Q9NTJ3 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
SMC4Q9NTJ3 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SMC4Q9NTJ3 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC19.63■□□□□ 0.73
SMC4Q9NTJ3 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC19.63■□□□□ 0.73
SMC4Q9NTJ3 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SMC4Q9NTJ3 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SMC4Q9NTJ3 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC19.63■□□□□ 0.73
SMC4Q9NTJ3 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
SMC4Q9NTJ3 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
SMC4Q9NTJ3 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SMC4Q9NTJ3 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SMC4Q9NTJ3 NSL1-201ENST00000366976 722 ntTSL 2 BASIC19.63■□□□□ 0.73
SMC4Q9NTJ3 CALY-203ENST00000368558 825 ntTSL 5 BASIC19.63■□□□□ 0.73
SMC4Q9NTJ3 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SMC4Q9NTJ3 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
SMC4Q9NTJ3 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SMC4Q9NTJ3 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC19.63■□□□□ 0.73
SMC4Q9NTJ3 HLA-K-203ENST00000430151 1046 ntBASIC19.63■□□□□ 0.73
SMC4Q9NTJ3 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC19.63■□□□□ 0.73
SMC4Q9NTJ3 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC19.63■□□□□ 0.73
SMC4Q9NTJ3 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC19.63■□□□□ 0.73
SMC4Q9NTJ3 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC19.63■□□□□ 0.73
SMC4Q9NTJ3 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SMC4Q9NTJ3 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SMC4Q9NTJ3 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SMC4Q9NTJ3 COX11-202ENST00000571584 1108 ntTSL 2 BASIC19.63■□□□□ 0.73
SMC4Q9NTJ3 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SMC4Q9NTJ3 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC19.63■□□□□ 0.73
SMC4Q9NTJ3 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
SMC4Q9NTJ3 AC005252.2-201ENST00000624630 1141 ntBASIC19.63■□□□□ 0.73
SMC4Q9NTJ3 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SMC4Q9NTJ3 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC19.63■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 66.1 ms