Protein–RNA interactions for Protein: Q9BZI7

UPF3B, Regulator of nonsense transcripts 3B, humanhuman

Known RBP Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3BQ9BZI7 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
UPF3BQ9BZI7 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC18.34■□□□□ 0.53
UPF3BQ9BZI7 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC18.34■□□□□ 0.53
UPF3BQ9BZI7 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC18.34■□□□□ 0.53
UPF3BQ9BZI7 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC18.34■□□□□ 0.53
UPF3BQ9BZI7 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC18.34■□□□□ 0.53
UPF3BQ9BZI7 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC18.34■□□□□ 0.53
UPF3BQ9BZI7 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
UPF3BQ9BZI7 INGX-202ENST00000489074 768 ntBASIC18.34■□□□□ 0.53
UPF3BQ9BZI7 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
UPF3BQ9BZI7 IGHV3-42-201ENST00000520410 361 ntBASIC18.34■□□□□ 0.53
UPF3BQ9BZI7 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
UPF3BQ9BZI7 AC009407.1-201ENST00000568958 598 ntBASIC18.34■□□□□ 0.53
UPF3BQ9BZI7 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC18.34■□□□□ 0.53
UPF3BQ9BZI7 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
UPF3BQ9BZI7 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC18.34■□□□□ 0.53
UPF3BQ9BZI7 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
UPF3BQ9BZI7 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
UPF3BQ9BZI7 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC18.34■□□□□ 0.53
UPF3BQ9BZI7 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
UPF3BQ9BZI7 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
UPF3BQ9BZI7 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
UPF3BQ9BZI7 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC18.34■□□□□ 0.53
UPF3BQ9BZI7 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
UPF3BQ9BZI7 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
UPF3BQ9BZI7 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
UPF3BQ9BZI7 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
UPF3BQ9BZI7 AC005912.2-201ENST00000619492 2400 ntBASIC18.33■□□□□ 0.53
UPF3BQ9BZI7 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
UPF3BQ9BZI7 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
UPF3BQ9BZI7 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
UPF3BQ9BZI7 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
UPF3BQ9BZI7 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
UPF3BQ9BZI7 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC18.33■□□□□ 0.53
UPF3BQ9BZI7 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC18.33■□□□□ 0.53
UPF3BQ9BZI7 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC18.33■□□□□ 0.53
UPF3BQ9BZI7 AC018529.2-202ENST00000611482 3087 ntBASIC18.33■□□□□ 0.53
UPF3BQ9BZI7 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC18.33■□□□□ 0.53
UPF3BQ9BZI7 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
UPF3BQ9BZI7 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
UPF3BQ9BZI7 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
UPF3BQ9BZI7 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC18.33■□□□□ 0.52
UPF3BQ9BZI7 AC009477.1-201ENST00000452936 217 ntBASIC18.33■□□□□ 0.52
UPF3BQ9BZI7 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC18.33■□□□□ 0.52
UPF3BQ9BZI7 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC18.33■□□□□ 0.52
UPF3BQ9BZI7 ZNF890P-202ENST00000530367 1156 ntBASIC18.33■□□□□ 0.52
UPF3BQ9BZI7 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC18.33■□□□□ 0.52
UPF3BQ9BZI7 AQP6-203ENST00000551733 849 ntTSL 3 BASIC18.33■□□□□ 0.52
UPF3BQ9BZI7 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
UPF3BQ9BZI7 SSH2-210ENST00000582084 560 ntTSL 3 BASIC18.33■□□□□ 0.52
UPF3BQ9BZI7 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC18.33■□□□□ 0.52
UPF3BQ9BZI7 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC18.33■□□□□ 0.52
UPF3BQ9BZI7 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC18.33■□□□□ 0.52
UPF3BQ9BZI7 AL390754.1-201ENST00000619088 582 ntBASIC18.33■□□□□ 0.52
UPF3BQ9BZI7 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
UPF3BQ9BZI7 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
UPF3BQ9BZI7 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
UPF3BQ9BZI7 MTHFR-210ENST00000641407 2387 ntBASIC18.33■□□□□ 0.52
UPF3BQ9BZI7 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
UPF3BQ9BZI7 AC140479.7-201ENST00000636301 2332 ntBASIC18.33■□□□□ 0.52
UPF3BQ9BZI7 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
UPF3BQ9BZI7 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
UPF3BQ9BZI7 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
UPF3BQ9BZI7 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC18.33■□□□□ 0.52
UPF3BQ9BZI7 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
UPF3BQ9BZI7 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
UPF3BQ9BZI7 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
UPF3BQ9BZI7 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC18.32■□□□□ 0.52
UPF3BQ9BZI7 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC18.32■□□□□ 0.52
UPF3BQ9BZI7 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC18.32■□□□□ 0.52
UPF3BQ9BZI7 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC18.32■□□□□ 0.52
UPF3BQ9BZI7 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
UPF3BQ9BZI7 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
UPF3BQ9BZI7 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
UPF3BQ9BZI7 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
UPF3BQ9BZI7 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC18.32■□□□□ 0.52
UPF3BQ9BZI7 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC18.32■□□□□ 0.52
UPF3BQ9BZI7 AC007191.1-201ENST00000623179 2995 ntBASIC18.32■□□□□ 0.52
UPF3BQ9BZI7 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC18.32■□□□□ 0.52
UPF3BQ9BZI7 AC117489.1-201ENST00000625169 3217 ntBASIC18.32■□□□□ 0.52
UPF3BQ9BZI7 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
UPF3BQ9BZI7 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
UPF3BQ9BZI7 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC18.32■□□□□ 0.52
UPF3BQ9BZI7 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC18.32■□□□□ 0.52
UPF3BQ9BZI7 AC114501.2-201ENST00000439631 535 ntBASIC18.32■□□□□ 0.52
UPF3BQ9BZI7 TERF1P3-201ENST00000505638 1227 ntBASIC18.32■□□□□ 0.52
UPF3BQ9BZI7 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC18.32■□□□□ 0.52
UPF3BQ9BZI7 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC18.32■□□□□ 0.52
UPF3BQ9BZI7 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC18.32■□□□□ 0.52
UPF3BQ9BZI7 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC18.32■□□□□ 0.52
UPF3BQ9BZI7 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
UPF3BQ9BZI7 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC18.32■□□□□ 0.52
UPF3BQ9BZI7 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC18.32■□□□□ 0.52
UPF3BQ9BZI7 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC18.32■□□□□ 0.52
UPF3BQ9BZI7 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC18.32■□□□□ 0.52
UPF3BQ9BZI7 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
UPF3BQ9BZI7 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
UPF3BQ9BZI7 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
UPF3BQ9BZI7 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
UPF3BQ9BZI7 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 65.7 ms