Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
TTC28Q96AY4 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC15.12■□□□□ 0.01
TTC28Q96AY4 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
TTC28Q96AY4 EFHD1-207ENST00000611312 1490 ntTSL 5 BASIC15.12■□□□□ 0.01
TTC28Q96AY4 PPHLN1-223ENST00000610488 1521 ntTSL 5 BASIC15.12■□□□□ 0.01
TTC28Q96AY4 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TTC28Q96AY4 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
TTC28Q96AY4 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
TTC28Q96AY4 AL157407.1-201ENST00000435784 904 ntBASIC15.12■□□□□ 0.01
TTC28Q96AY4 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
TTC28Q96AY4 C10orf91-203ENST00000490765 462 ntTSL 3 BASIC15.12■□□□□ 0.01
TTC28Q96AY4 AC147876.1-201ENST00000504408 322 ntBASIC15.12■□□□□ 0.01
TTC28Q96AY4 CD164-210ENST00000512821 964 ntTSL 2 BASIC15.12■□□□□ 0.01
TTC28Q96AY4 C1orf198-207ENST00000523410 1041 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
TTC28Q96AY4 RPL18-205ENST00000549273 1036 ntTSL 2 BASIC15.12■□□□□ 0.01
TTC28Q96AY4 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
TTC28Q96AY4 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC15.12■□□□□ 0.01
TTC28Q96AY4 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TTC28Q96AY4 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TTC28Q96AY4 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
TTC28Q96AY4 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
TTC28Q96AY4 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TTC28Q96AY4 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC15.12■□□□□ 0.01
TTC28Q96AY4 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TTC28Q96AY4 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
TTC28Q96AY4 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
TTC28Q96AY4 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
TTC28Q96AY4 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
TTC28Q96AY4 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
TTC28Q96AY4 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
TTC28Q96AY4 HIST1H4B-201ENST00000377745 438 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
TTC28Q96AY4 LINC01983-201ENST00000413586 574 ntTSL 2 BASIC15.11■□□□□ 0.01
TTC28Q96AY4 AC025186.1-201ENST00000478174 870 ntBASIC15.11■□□□□ 0.01
TTC28Q96AY4 HOXC-AS3-203ENST00000514702 368 ntTSL 3 BASIC15.11■□□□□ 0.01
TTC28Q96AY4 F11R-204ENST00000537746 1245 ntTSL 2 BASIC15.11■□□□□ 0.01
TTC28Q96AY4 SOCS2-AS1-204ENST00000551626 618 ntTSL 4 BASIC15.11■□□□□ 0.01
TTC28Q96AY4 ACSM5-206ENST00000575584 1130 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
TTC28Q96AY4 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC15.11■□□□□ 0.01
TTC28Q96AY4 USP32P3-202ENST00000583574 611 ntTSL 3 BASIC15.11■□□□□ 0.01
TTC28Q96AY4 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC15.11■□□□□ 0.01
TTC28Q96AY4 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC15.11■□□□□ 0.01
TTC28Q96AY4 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC15.11■□□□□ 0.01
TTC28Q96AY4 PTGR1-205ENST00000407693 1407 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TTC28Q96AY4 SLC25A24-204ENST00000569674 2357 ntBASIC15.11■□□□□ 0.01
TTC28Q96AY4 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
TTC28Q96AY4 TMBIM7P-202ENST00000641474 1516 ntBASIC15.11■□□□□ 0.01
TTC28Q96AY4 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC15.11■□□□□ 0.01
TTC28Q96AY4 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC15.11■□□□□ 0.01
TTC28Q96AY4 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TTC28Q96AY4 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TTC28Q96AY4 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
TTC28Q96AY4 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
TTC28Q96AY4 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TTC28Q96AY4 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC15.11■□□□□ 0.01
TTC28Q96AY4 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC15.11■□□□□ 0.01
TTC28Q96AY4 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
TTC28Q96AY4 CCL24-201ENST00000222902 582 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TTC28Q96AY4 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
TTC28Q96AY4 PIFO-201ENST00000369737 746 ntTSL 2 BASIC15.11■□□□□ 0.01
TTC28Q96AY4 LINC01022-201ENST00000415652 394 ntTSL 3 BASIC15.11■□□□□ 0.01
TTC28Q96AY4 PGAM1P11-201ENST00000416729 680 ntBASIC15.11■□□□□ 0.01
TTC28Q96AY4 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC15.11■□□□□ 0.01
TTC28Q96AY4 TMEM123-208ENST00000532161 743 ntAPPRIS ALT2 TSL 3 BASIC15.11■□□□□ 0.01
TTC28Q96AY4 ANAPC15-204ENST00000535234 848 ntAPPRIS P3 TSL 2 BASIC15.11■□□□□ 0.01
TTC28Q96AY4 TMEM202-AS1-201ENST00000562573 723 ntTSL 3 BASIC15.11■□□□□ 0.01
TTC28Q96AY4 AC009145.4-201ENST00000625119 1294 ntBASIC15.11■□□□□ 0.01
TTC28Q96AY4 PSMC5-212ENST00000581882 1474 ntTSL 5 BASIC15.11■□□□□ 0.01
TTC28Q96AY4 ANXA3-202ENST00000503570 1524 ntTSL 5 BASIC15.11■□□□□ 0.01
TTC28Q96AY4 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC15.11■□□□□ 0.01
TTC28Q96AY4 IZUMO1-201ENST00000332955 1621 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TTC28Q96AY4 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TTC28Q96AY4 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TTC28Q96AY4 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC15.11■□□□□ 0.01
TTC28Q96AY4 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TTC28Q96AY4 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TTC28Q96AY4 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC15.11■□□□□ 0.01
TTC28Q96AY4 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TTC28Q96AY4 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TTC28Q96AY4 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
TTC28Q96AY4 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC15.11■□□□□ 0.01
TTC28Q96AY4 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC15.11■□□□□ 0.01
TTC28Q96AY4 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TTC28Q96AY4 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
TTC28Q96AY4 AC006058.4-201ENST00000624016 1670 ntBASIC15.1■□□□□ 0.01
TTC28Q96AY4 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TTC28Q96AY4 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC15.1■□□□□ 0.01
TTC28Q96AY4 MRPL18-201ENST00000367034 978 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TTC28Q96AY4 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC15.1■□□□□ 0.01
TTC28Q96AY4 AC131235.2-201ENST00000445553 1057 ntBASIC15.1■□□□□ 0.01
TTC28Q96AY4 RPL18AP8-201ENST00000486071 528 ntBASIC15.1■□□□□ 0.01
TTC28Q96AY4 GLT8D2-204ENST00000547583 862 ntTSL 5 BASIC15.1■□□□□ 0.01
TTC28Q96AY4 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC15.1■□□□□ 0.01
TTC28Q96AY4 AC135782.2-201ENST00000562040 472 ntTSL 3 BASIC15.1■□□□□ 0.01
TTC28Q96AY4 DERL2-206ENST00000572834 589 ntTSL 3 BASIC15.1■□□□□ 0.01
TTC28Q96AY4 AC087072.1-201ENST00000603727 421 ntBASIC15.1■□□□□ 0.01
TTC28Q96AY4 POU5F1-207ENST00000606567 1236 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
TTC28Q96AY4 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC15.1■□□□□ 0.01
TTC28Q96AY4 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TTC28Q96AY4 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
TTC28Q96AY4 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms