Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HPS3Q969F9 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC16.98■□□□□ 0.31
HPS3Q969F9 WASH4P-201ENST00000564273 1246 ntBASIC16.98■□□□□ 0.31
HPS3Q969F9 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC16.98■□□□□ 0.31
HPS3Q969F9 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC16.98■□□□□ 0.31
HPS3Q969F9 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC16.98■□□□□ 0.31
HPS3Q969F9 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
HPS3Q969F9 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC16.98■□□□□ 0.31
HPS3Q969F9 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HPS3Q969F9 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
HPS3Q969F9 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC16.98■□□□□ 0.31
HPS3Q969F9 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
HPS3Q969F9 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
HPS3Q969F9 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
HPS3Q969F9 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC16.98■□□□□ 0.31
HPS3Q969F9 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
HPS3Q969F9 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC16.98■□□□□ 0.31
HPS3Q969F9 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC16.98■□□□□ 0.31
HPS3Q969F9 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC16.97■□□□□ 0.31
HPS3Q969F9 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
HPS3Q969F9 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC16.97■□□□□ 0.31
HPS3Q969F9 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
HPS3Q969F9 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
HPS3Q969F9 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
HPS3Q969F9 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
HPS3Q969F9 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC16.97■□□□□ 0.31
HPS3Q969F9 AL158070.2-201ENST00000623713 1621 ntBASIC16.97■□□□□ 0.31
HPS3Q969F9 AC018529.2-202ENST00000611482 3087 ntBASIC16.97■□□□□ 0.31
HPS3Q969F9 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HPS3Q969F9 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HPS3Q969F9 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
HPS3Q969F9 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
HPS3Q969F9 DFFBP1-201ENST00000433250 979 ntBASIC16.97■□□□□ 0.31
HPS3Q969F9 OARD1-208ENST00000469104 704 ntTSL 2 BASIC16.97■□□□□ 0.31
HPS3Q969F9 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC16.97■□□□□ 0.31
HPS3Q969F9 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC16.97■□□□□ 0.31
HPS3Q969F9 CDK4-206ENST00000549606 558 ntTSL 2 BASIC16.97■□□□□ 0.31
HPS3Q969F9 AL359711.2-201ENST00000563105 872 ntBASIC16.97■□□□□ 0.31
HPS3Q969F9 CTBP2P3-201ENST00000585629 1255 ntBASIC16.97■□□□□ 0.31
HPS3Q969F9 AC008494.3-201ENST00000606615 944 ntBASIC16.97■□□□□ 0.31
HPS3Q969F9 AC099568.2-201ENST00000609194 695 ntBASIC16.97■□□□□ 0.31
HPS3Q969F9 AC007431.3-201ENST00000623221 587 ntBASIC16.97■□□□□ 0.31
HPS3Q969F9 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC16.97■□□□□ 0.31
HPS3Q969F9 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC16.97■□□□□ 0.31
HPS3Q969F9 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC16.97■□□□□ 0.31
HPS3Q969F9 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HPS3Q969F9 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
HPS3Q969F9 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
HPS3Q969F9 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
HPS3Q969F9 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
HPS3Q969F9 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC16.97■□□□□ 0.31
HPS3Q969F9 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
HPS3Q969F9 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
HPS3Q969F9 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HPS3Q969F9 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
HPS3Q969F9 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
HPS3Q969F9 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
HPS3Q969F9 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HPS3Q969F9 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
HPS3Q969F9 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC16.97■□□□□ 0.31
HPS3Q969F9 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HPS3Q969F9 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HPS3Q969F9 AL360270.3-201ENST00000609118 1348 ntBASIC16.96■□□□□ 0.31
HPS3Q969F9 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC16.96■□□□□ 0.31
HPS3Q969F9 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
HPS3Q969F9 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HPS3Q969F9 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HPS3Q969F9 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HPS3Q969F9 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HPS3Q969F9 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HPS3Q969F9 INTS4P2-202ENST00000614726 2019 ntBASIC16.96■□□□□ 0.31
HPS3Q969F9 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HPS3Q969F9 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HPS3Q969F9 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC16.96■□□□□ 0.31
HPS3Q969F9 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.31
HPS3Q969F9 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HPS3Q969F9 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HPS3Q969F9 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC16.96■□□□□ 0.31
HPS3Q969F9 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
HPS3Q969F9 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
HPS3Q969F9 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HPS3Q969F9 MEP1AP4-201ENST00000423244 1087 ntBASIC16.96■□□□□ 0.31
HPS3Q969F9 AL353779.1-201ENST00000434793 351 ntBASIC16.96■□□□□ 0.31
HPS3Q969F9 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC16.96■□□□□ 0.31
HPS3Q969F9 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HPS3Q969F9 MYCLP2-201ENST00000449268 967 ntBASIC16.96■□□□□ 0.31
HPS3Q969F9 ELK1P1-201ENST00000485699 580 ntBASIC16.96■□□□□ 0.31
HPS3Q969F9 HNRNPA1P13-201ENST00000510646 963 ntBASIC16.96■□□□□ 0.31
HPS3Q969F9 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HPS3Q969F9 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC16.96■□□□□ 0.31
HPS3Q969F9 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC16.96■□□□□ 0.31
HPS3Q969F9 RRP7BP-205ENST00000566851 833 ntBASIC16.96■□□□□ 0.31
HPS3Q969F9 SPDYE22P-201ENST00000582158 798 ntBASIC16.96■□□□□ 0.31
HPS3Q969F9 AC093726.1-201ENST00000608064 963 ntBASIC16.96■□□□□ 0.31
HPS3Q969F9 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
HPS3Q969F9 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HPS3Q969F9 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC16.96■□□□□ 0.31
HPS3Q969F9 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HPS3Q969F9 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HPS3Q969F9 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms