Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
SHROOM3Q8TF72 CICP23-201ENST00000605013 2741 ntBASIC15.58■□□□□ 0.08
SHROOM3Q8TF72 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC15.58■□□□□ 0.08
SHROOM3Q8TF72 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
SHROOM3Q8TF72 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC15.58■□□□□ 0.08
SHROOM3Q8TF72 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SHROOM3Q8TF72 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
SHROOM3Q8TF72 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
SHROOM3Q8TF72 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
SHROOM3Q8TF72 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SHROOM3Q8TF72 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SHROOM3Q8TF72 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC15.57■□□□□ 0.08
SHROOM3Q8TF72 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC15.57■□□□□ 0.08
SHROOM3Q8TF72 COCH-203ENST00000460581 2688 ntTSL 2 BASIC15.57■□□□□ 0.08
SHROOM3Q8TF72 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC15.57■□□□□ 0.08
SHROOM3Q8TF72 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
SHROOM3Q8TF72 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC15.57■□□□□ 0.08
SHROOM3Q8TF72 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SHROOM3Q8TF72 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC15.57■□□□□ 0.08
SHROOM3Q8TF72 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
SHROOM3Q8TF72 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SHROOM3Q8TF72 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SHROOM3Q8TF72 AL139094.1-201ENST00000405549 1188 ntBASIC15.57■□□□□ 0.08
SHROOM3Q8TF72 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC15.57■□□□□ 0.08
SHROOM3Q8TF72 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC15.57■□□□□ 0.08
SHROOM3Q8TF72 AC068587.3-201ENST00000526613 355 ntBASIC15.57■□□□□ 0.08
SHROOM3Q8TF72 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
SHROOM3Q8TF72 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC15.57■□□□□ 0.08
SHROOM3Q8TF72 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC15.57■□□□□ 0.08
SHROOM3Q8TF72 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
SHROOM3Q8TF72 COX11-210ENST00000639671 696 ntBASIC15.57■□□□□ 0.08
SHROOM3Q8TF72 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
SHROOM3Q8TF72 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SHROOM3Q8TF72 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SHROOM3Q8TF72 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
SHROOM3Q8TF72 LINC00552-201ENST00000625151 2579 ntBASIC15.57■□□□□ 0.08
SHROOM3Q8TF72 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC15.57■□□□□ 0.08
SHROOM3Q8TF72 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
SHROOM3Q8TF72 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC15.57■□□□□ 0.08
SHROOM3Q8TF72 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SHROOM3Q8TF72 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
SHROOM3Q8TF72 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
SHROOM3Q8TF72 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC15.57■□□□□ 0.08
SHROOM3Q8TF72 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SHROOM3Q8TF72 AC006058.4-201ENST00000624016 1670 ntBASIC15.57■□□□□ 0.08
SHROOM3Q8TF72 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
SHROOM3Q8TF72 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SHROOM3Q8TF72 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC15.57■□□□□ 0.08
SHROOM3Q8TF72 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SHROOM3Q8TF72 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
SHROOM3Q8TF72 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC15.57■□□□□ 0.08
SHROOM3Q8TF72 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
SHROOM3Q8TF72 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
SHROOM3Q8TF72 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SHROOM3Q8TF72 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SHROOM3Q8TF72 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
SHROOM3Q8TF72 AC092933.1-201ENST00000393644 945 ntBASIC15.56■□□□□ 0.08
SHROOM3Q8TF72 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC15.56■□□□□ 0.08
SHROOM3Q8TF72 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
SHROOM3Q8TF72 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
SHROOM3Q8TF72 USB1-203ENST00000539737 1212 ntTSL 2 BASIC15.56■□□□□ 0.08
SHROOM3Q8TF72 PTP4A1P2-201ENST00000546033 454 ntBASIC15.56■□□□□ 0.08
SHROOM3Q8TF72 METTL26-214ENST00000614890 801 ntTSL 3 BASIC15.56■□□□□ 0.08
SHROOM3Q8TF72 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SHROOM3Q8TF72 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SHROOM3Q8TF72 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SHROOM3Q8TF72 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
SHROOM3Q8TF72 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SHROOM3Q8TF72 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SHROOM3Q8TF72 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC15.56■□□□□ 0.08
SHROOM3Q8TF72 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SHROOM3Q8TF72 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC15.56■□□□□ 0.08
SHROOM3Q8TF72 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
SHROOM3Q8TF72 FGD5P1-202ENST00000614866 2498 ntBASIC15.56■□□□□ 0.08
SHROOM3Q8TF72 LRRC59-203ENST00000576448 1531 ntBASIC15.56■□□□□ 0.08
SHROOM3Q8TF72 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SHROOM3Q8TF72 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC15.56■□□□□ 0.08
SHROOM3Q8TF72 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SHROOM3Q8TF72 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SHROOM3Q8TF72 MSTO2P-201ENST00000314835 1709 ntBASIC15.56■□□□□ 0.08
SHROOM3Q8TF72 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SHROOM3Q8TF72 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SHROOM3Q8TF72 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SHROOM3Q8TF72 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SHROOM3Q8TF72 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SHROOM3Q8TF72 B9D1-203ENST00000395615 805 ntTSL 3 BASIC15.56■□□□□ 0.08
SHROOM3Q8TF72 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
SHROOM3Q8TF72 AC012441.1-201ENST00000446669 685 ntBASIC15.56■□□□□ 0.08
SHROOM3Q8TF72 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC15.56■□□□□ 0.08
SHROOM3Q8TF72 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC15.56■□□□□ 0.08
SHROOM3Q8TF72 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC15.56■□□□□ 0.08
SHROOM3Q8TF72 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC15.56■□□□□ 0.08
SHROOM3Q8TF72 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SHROOM3Q8TF72 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SHROOM3Q8TF72 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC15.56■□□□□ 0.08
SHROOM3Q8TF72 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SHROOM3Q8TF72 GSN-203ENST00000373808 2664 ntTSL 2 BASIC15.56■□□□□ 0.08
SHROOM3Q8TF72 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
SHROOM3Q8TF72 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC15.56■□□□□ 0.08
SHROOM3Q8TF72 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms