Protein–RNA interactions for Protein: Q70EL4

USP43, Ubiquitin carboxyl-terminal hydrolase 43, humanhuman

Predictions only

Length 1,123 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP43Q70EL4 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
USP43Q70EL4 ALG1L5P-201ENST00000482043 771 ntBASIC14.08□□□□□ -0.16
USP43Q70EL4 CCND1-203ENST00000536559 553 ntTSL 3 BASIC14.08□□□□□ -0.16
USP43Q70EL4 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC14.08□□□□□ -0.16
USP43Q70EL4 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC14.08□□□□□ -0.16
USP43Q70EL4 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
USP43Q70EL4 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC14.08□□□□□ -0.16
USP43Q70EL4 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
USP43Q70EL4 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
USP43Q70EL4 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC14.08□□□□□ -0.16
USP43Q70EL4 ORC5-208ENST00000626700 344 ntTSL 3 BASIC14.08□□□□□ -0.16
USP43Q70EL4 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC14.08□□□□□ -0.16
USP43Q70EL4 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC14.08□□□□□ -0.16
USP43Q70EL4 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
USP43Q70EL4 RER1-207ENST00000488353 2469 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
USP43Q70EL4 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
USP43Q70EL4 GABPB1-201ENST00000220429 2726 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
USP43Q70EL4 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
USP43Q70EL4 LPO-201ENST00000262290 2979 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
USP43Q70EL4 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC14.08□□□□□ -0.16
USP43Q70EL4 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
USP43Q70EL4 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
USP43Q70EL4 NRROS-201ENST00000328557 2564 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
USP43Q70EL4 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
USP43Q70EL4 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
USP43Q70EL4 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.16
USP43Q70EL4 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
USP43Q70EL4 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
USP43Q70EL4 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
USP43Q70EL4 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
USP43Q70EL4 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC14.08□□□□□ -0.16
USP43Q70EL4 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
USP43Q70EL4 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
USP43Q70EL4 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC14.08□□□□□ -0.16
USP43Q70EL4 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
USP43Q70EL4 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
USP43Q70EL4 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC14.07□□□□□ -0.16
USP43Q70EL4 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
USP43Q70EL4 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
USP43Q70EL4 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
USP43Q70EL4 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
USP43Q70EL4 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
USP43Q70EL4 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
USP43Q70EL4 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
USP43Q70EL4 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
USP43Q70EL4 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
USP43Q70EL4 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC14.07□□□□□ -0.16
USP43Q70EL4 AGO3-201ENST00000246314 3211 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
USP43Q70EL4 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
USP43Q70EL4 SLFNL1-204ENST00000372613 2654 ntTSL 2 BASIC14.07□□□□□ -0.16
USP43Q70EL4 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC14.07□□□□□ -0.16
USP43Q70EL4 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
USP43Q70EL4 CD99-202ENST00000381180 530 ntTSL 2 BASIC14.07□□□□□ -0.16
USP43Q70EL4 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC14.07□□□□□ -0.16
USP43Q70EL4 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
USP43Q70EL4 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC14.07□□□□□ -0.16
USP43Q70EL4 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC14.07□□□□□ -0.16
USP43Q70EL4 AC036214.1-201ENST00000502766 2126 ntTSL 2 BASIC14.07□□□□□ -0.16
USP43Q70EL4 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
USP43Q70EL4 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC14.07□□□□□ -0.16
USP43Q70EL4 MAL2-202ENST00000531508 892 ntTSL 3 BASIC14.07□□□□□ -0.16
USP43Q70EL4 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC14.07□□□□□ -0.16
USP43Q70EL4 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC14.07□□□□□ -0.16
USP43Q70EL4 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
USP43Q70EL4 GGTLC5P-201ENST00000617623 998 ntBASIC14.07□□□□□ -0.16
USP43Q70EL4 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
USP43Q70EL4 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC14.07□□□□□ -0.16
USP43Q70EL4 AL805961.1-202ENST00000641562 540 ntBASIC14.07□□□□□ -0.16
USP43Q70EL4 AC092865.6-201ENST00000642101 219 ntBASIC14.07□□□□□ -0.16
USP43Q70EL4 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC14.07□□□□□ -0.16
USP43Q70EL4 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
USP43Q70EL4 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
USP43Q70EL4 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC14.07□□□□□ -0.16
USP43Q70EL4 COL1A2-201ENST00000297268 5411 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
USP43Q70EL4 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC14.07□□□□□ -0.16
USP43Q70EL4 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
USP43Q70EL4 CYP20A1-201ENST00000356079 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
USP43Q70EL4 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC14.07□□□□□ -0.16
USP43Q70EL4 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC14.07□□□□□ -0.16
USP43Q70EL4 ACSM2A-209ENST00000573854 2837 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
USP43Q70EL4 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
USP43Q70EL4 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
USP43Q70EL4 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC14.07□□□□□ -0.16
USP43Q70EL4 GRAMD4-202ENST00000406902 4484 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
USP43Q70EL4 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
USP43Q70EL4 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
USP43Q70EL4 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
USP43Q70EL4 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
USP43Q70EL4 RGS12-202ENST00000338806 3010 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
USP43Q70EL4 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
USP43Q70EL4 STEAP2-201ENST00000287908 6873 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
USP43Q70EL4 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
USP43Q70EL4 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
USP43Q70EL4 GTF2IRD1-202ENST00000424337 3077 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
USP43Q70EL4 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
USP43Q70EL4 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC14.06□□□□□ -0.16
USP43Q70EL4 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
USP43Q70EL4 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
USP43Q70EL4 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
USP43Q70EL4 ATE1-202ENST00000369040 4803 ntTSL 2 BASIC14.06□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 62.1 ms