Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
KRT39Q6A163 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC16.55■□□□□ 0.24
KRT39Q6A163 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC16.55■□□□□ 0.24
KRT39Q6A163 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
KRT39Q6A163 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
KRT39Q6A163 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
KRT39Q6A163 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
KRT39Q6A163 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
KRT39Q6A163 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
KRT39Q6A163 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC16.55■□□□□ 0.24
KRT39Q6A163 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
KRT39Q6A163 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC16.55■□□□□ 0.24
KRT39Q6A163 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
KRT39Q6A163 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC16.55■□□□□ 0.24
KRT39Q6A163 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC16.55■□□□□ 0.24
KRT39Q6A163 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC16.55■□□□□ 0.24
KRT39Q6A163 CTBP2P3-201ENST00000585629 1255 ntBASIC16.55■□□□□ 0.24
KRT39Q6A163 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC16.55■□□□□ 0.24
KRT39Q6A163 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC16.55■□□□□ 0.24
KRT39Q6A163 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC16.55■□□□□ 0.24
KRT39Q6A163 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
KRT39Q6A163 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
KRT39Q6A163 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC16.55■□□□□ 0.24
KRT39Q6A163 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
KRT39Q6A163 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
KRT39Q6A163 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
KRT39Q6A163 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
KRT39Q6A163 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
KRT39Q6A163 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC16.55■□□□□ 0.24
KRT39Q6A163 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
KRT39Q6A163 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
KRT39Q6A163 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
KRT39Q6A163 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
KRT39Q6A163 AJ011931.1-201ENST00000618749 2492 ntBASIC16.55■□□□□ 0.24
KRT39Q6A163 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
KRT39Q6A163 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
KRT39Q6A163 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
KRT39Q6A163 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
KRT39Q6A163 AGER-206ENST00000375070 1463 ntTSL 5 BASIC16.54■□□□□ 0.24
KRT39Q6A163 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
KRT39Q6A163 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
KRT39Q6A163 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
KRT39Q6A163 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC16.54■□□□□ 0.24
KRT39Q6A163 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
KRT39Q6A163 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
KRT39Q6A163 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC16.54■□□□□ 0.24
KRT39Q6A163 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
KRT39Q6A163 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
KRT39Q6A163 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
KRT39Q6A163 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
KRT39Q6A163 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
KRT39Q6A163 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
KRT39Q6A163 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
KRT39Q6A163 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC16.54■□□□□ 0.24
KRT39Q6A163 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
KRT39Q6A163 CRB3P1-201ENST00000449338 276 ntBASIC16.54■□□□□ 0.24
KRT39Q6A163 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
KRT39Q6A163 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
KRT39Q6A163 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC16.54■□□□□ 0.24
KRT39Q6A163 WASH4P-201ENST00000564273 1246 ntBASIC16.54■□□□□ 0.24
KRT39Q6A163 SPDYE22P-201ENST00000582158 798 ntBASIC16.54■□□□□ 0.24
KRT39Q6A163 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
KRT39Q6A163 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC16.54■□□□□ 0.24
KRT39Q6A163 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
KRT39Q6A163 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
KRT39Q6A163 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
KRT39Q6A163 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC16.54■□□□□ 0.24
KRT39Q6A163 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
KRT39Q6A163 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
KRT39Q6A163 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
KRT39Q6A163 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
KRT39Q6A163 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
KRT39Q6A163 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC16.54■□□□□ 0.24
KRT39Q6A163 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
KRT39Q6A163 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
KRT39Q6A163 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC16.54■□□□□ 0.24
KRT39Q6A163 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC16.54■□□□□ 0.24
KRT39Q6A163 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
KRT39Q6A163 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC16.54■□□□□ 0.24
KRT39Q6A163 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
KRT39Q6A163 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
KRT39Q6A163 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
KRT39Q6A163 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
KRT39Q6A163 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
KRT39Q6A163 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
KRT39Q6A163 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
KRT39Q6A163 AL157414.3-201ENST00000624276 1954 ntBASIC16.53■□□□□ 0.24
KRT39Q6A163 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
KRT39Q6A163 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
KRT39Q6A163 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC16.53■□□□□ 0.24
KRT39Q6A163 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC16.53■□□□□ 0.24
KRT39Q6A163 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
KRT39Q6A163 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
KRT39Q6A163 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC16.53■□□□□ 0.24
KRT39Q6A163 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
KRT39Q6A163 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
KRT39Q6A163 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
KRT39Q6A163 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC16.53■□□□□ 0.24
KRT39Q6A163 PES1-204ENST00000402284 2144 ntTSL 5 BASIC16.53■□□□□ 0.24
KRT39Q6A163 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms