Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC12.84□□□□□ -0.35
PDLIM3Q53GG5 PRYP6-201ENST00000514804 343 ntBASIC12.84□□□□□ -0.35
PDLIM3Q53GG5 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC12.84□□□□□ -0.35
PDLIM3Q53GG5 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
PDLIM3Q53GG5 AC092552.1-201ENST00000547243 906 ntBASIC12.84□□□□□ -0.35
PDLIM3Q53GG5 AC243562.2-201ENST00000561247 970 ntBASIC12.84□□□□□ -0.35
PDLIM3Q53GG5 AC106886.1-201ENST00000568660 600 ntBASIC12.84□□□□□ -0.35
PDLIM3Q53GG5 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
PDLIM3Q53GG5 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC12.84□□□□□ -0.35
PDLIM3Q53GG5 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC12.84□□□□□ -0.35
PDLIM3Q53GG5 Z84492.1-201ENST00000606589 408 ntAPPRIS P1 TSL 3 BASIC12.84□□□□□ -0.35
PDLIM3Q53GG5 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC12.84□□□□□ -0.35
PDLIM3Q53GG5 MIR6787-201ENST00000616675 61 ntBASIC12.84□□□□□ -0.35
PDLIM3Q53GG5 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC12.84□□□□□ -0.35
PDLIM3Q53GG5 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
PDLIM3Q53GG5 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
PDLIM3Q53GG5 CNTNAP3P2-201ENST00000617175 3861 ntBASIC12.84□□□□□ -0.35
PDLIM3Q53GG5 TSPOAP1-201ENST00000268893 7483 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
PDLIM3Q53GG5 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
PDLIM3Q53GG5 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC12.84□□□□□ -0.35
PDLIM3Q53GG5 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC12.84□□□□□ -0.35
PDLIM3Q53GG5 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
PDLIM3Q53GG5 C10orf71-201ENST00000374144 5230 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
PDLIM3Q53GG5 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC12.84□□□□□ -0.35
PDLIM3Q53GG5 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
PDLIM3Q53GG5 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
PDLIM3Q53GG5 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
PDLIM3Q53GG5 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC12.84□□□□□ -0.35
PDLIM3Q53GG5 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
PDLIM3Q53GG5 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
PDLIM3Q53GG5 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
PDLIM3Q53GG5 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.35
PDLIM3Q53GG5 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
PDLIM3Q53GG5 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
PDLIM3Q53GG5 AC126365.1-201ENST00000578585 1514 ntBASIC12.83□□□□□ -0.35
PDLIM3Q53GG5 REXO1L6P-201ENST00000603433 1515 ntBASIC12.83□□□□□ -0.35
PDLIM3Q53GG5 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
PDLIM3Q53GG5 KRT8P44-201ENST00000441609 1350 ntBASIC12.83□□□□□ -0.36
PDLIM3Q53GG5 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
PDLIM3Q53GG5 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
PDLIM3Q53GG5 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC12.83□□□□□ -0.36
PDLIM3Q53GG5 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC12.83□□□□□ -0.36
PDLIM3Q53GG5 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
PDLIM3Q53GG5 PRKCB-201ENST00000303531 7969 ntAPPRIS P4 TSL 1 (best) BASIC12.83□□□□□ -0.36
PDLIM3Q53GG5 GRIP2-204ENST00000619221 7977 ntAPPRIS P5 TSL 5 BASIC12.83□□□□□ -0.36
PDLIM3Q53GG5 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
PDLIM3Q53GG5 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
PDLIM3Q53GG5 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
PDLIM3Q53GG5 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
PDLIM3Q53GG5 LRRFIP1P1-201ENST00000498774 2246 ntBASIC12.83□□□□□ -0.36
PDLIM3Q53GG5 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
PDLIM3Q53GG5 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
PDLIM3Q53GG5 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
PDLIM3Q53GG5 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
PDLIM3Q53GG5 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
PDLIM3Q53GG5 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
PDLIM3Q53GG5 MXI1-205ENST00000393134 889 ntTSL 2 BASIC12.83□□□□□ -0.36
PDLIM3Q53GG5 NME2-201ENST00000393183 568 ntTSL 2 BASIC12.83□□□□□ -0.36
PDLIM3Q53GG5 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC12.83□□□□□ -0.36
PDLIM3Q53GG5 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
PDLIM3Q53GG5 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC12.83□□□□□ -0.36
PDLIM3Q53GG5 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC12.83□□□□□ -0.36
PDLIM3Q53GG5 INE1-201ENST00000456273 945 ntBASIC12.83□□□□□ -0.36
PDLIM3Q53GG5 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC12.83□□□□□ -0.36
PDLIM3Q53GG5 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
PDLIM3Q53GG5 CD7-202ENST00000578509 925 ntTSL 3 BASIC12.83□□□□□ -0.36
PDLIM3Q53GG5 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC12.83□□□□□ -0.36
PDLIM3Q53GG5 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
PDLIM3Q53GG5 AC073389.1-201ENST00000595595 795 ntBASIC12.83□□□□□ -0.36
PDLIM3Q53GG5 AC099522.2-201ENST00000607001 744 ntBASIC12.83□□□□□ -0.36
PDLIM3Q53GG5 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
PDLIM3Q53GG5 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
PDLIM3Q53GG5 TKT-202ENST00000423516 2075 ntTSL 2 BASIC12.83□□□□□ -0.36
PDLIM3Q53GG5 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
PDLIM3Q53GG5 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
PDLIM3Q53GG5 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
PDLIM3Q53GG5 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
PDLIM3Q53GG5 TPO-203ENST00000346956 2923 ntTSL 5 BASIC12.83□□□□□ -0.36
PDLIM3Q53GG5 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC12.83□□□□□ -0.36
PDLIM3Q53GG5 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC12.83□□□□□ -0.36
PDLIM3Q53GG5 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
PDLIM3Q53GG5 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC12.83□□□□□ -0.36
PDLIM3Q53GG5 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
PDLIM3Q53GG5 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
PDLIM3Q53GG5 FEM1A-201ENST00000269856 9593 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
PDLIM3Q53GG5 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
PDLIM3Q53GG5 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
PDLIM3Q53GG5 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC12.83□□□□□ -0.36
PDLIM3Q53GG5 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
PDLIM3Q53GG5 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
PDLIM3Q53GG5 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
PDLIM3Q53GG5 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC12.83□□□□□ -0.36
PDLIM3Q53GG5 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
PDLIM3Q53GG5 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
PDLIM3Q53GG5 TNS2-202ENST00000314276 4944 ntAPPRIS P4 TSL 1 (best) BASIC12.83□□□□□ -0.36
PDLIM3Q53GG5 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
PDLIM3Q53GG5 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
PDLIM3Q53GG5 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC12.82□□□□□ -0.36
PDLIM3Q53GG5 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
PDLIM3Q53GG5 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms