Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 Z99943.1-201ENST00000451545 718 ntTSL 3 BASIC18.36■□□□□ 0.53
CCDC88AQ3V6T2 AC092139.2-201ENST00000563750 754 ntTSL 3 BASIC18.36■□□□□ 0.53
CCDC88AQ3V6T2 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC88AQ3V6T2 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
CCDC88AQ3V6T2 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC88AQ3V6T2 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
CCDC88AQ3V6T2 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC88AQ3V6T2 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC88AQ3V6T2 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC18.36■□□□□ 0.53
CCDC88AQ3V6T2 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC88AQ3V6T2 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
CCDC88AQ3V6T2 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC88AQ3V6T2 RPL18AP3-201ENST00000462885 528 ntBASIC18.35■□□□□ 0.53
CCDC88AQ3V6T2 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC88AQ3V6T2 AL157792.1-201ENST00000488281 530 ntBASIC18.35■□□□□ 0.53
CCDC88AQ3V6T2 DNAJB13-203ENST00000537753 912 ntTSL 3 BASIC18.35■□□□□ 0.53
CCDC88AQ3V6T2 AC005632.3-201ENST00000605544 308 ntBASIC18.35■□□□□ 0.53
CCDC88AQ3V6T2 HIST1H2BE-201ENST00000614097 497 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
CCDC88AQ3V6T2 C15orf59-AS1-202ENST00000615095 1224 ntTSL 5 BASIC18.35■□□□□ 0.53
CCDC88AQ3V6T2 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC18.35■□□□□ 0.53
CCDC88AQ3V6T2 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC88AQ3V6T2 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC88AQ3V6T2 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC18.35■□□□□ 0.53
CCDC88AQ3V6T2 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC88AQ3V6T2 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC18.35■□□□□ 0.53
CCDC88AQ3V6T2 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
CCDC88AQ3V6T2 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC88AQ3V6T2 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC18.35■□□□□ 0.53
CCDC88AQ3V6T2 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC88AQ3V6T2 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC88AQ3V6T2 IFI35-203ENST00000415816 1241 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
CCDC88AQ3V6T2 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC18.35■□□□□ 0.53
CCDC88AQ3V6T2 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC18.35■□□□□ 0.53
CCDC88AQ3V6T2 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC18.35■□□□□ 0.53
CCDC88AQ3V6T2 MRPL49-209ENST00000534078 518 ntTSL 2 BASIC18.35■□□□□ 0.53
CCDC88AQ3V6T2 EMP2-203ENST00000536829 781 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
CCDC88AQ3V6T2 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC18.35■□□□□ 0.53
CCDC88AQ3V6T2 AP005901.3-201ENST00000581666 415 ntTSL 3 BASIC18.35■□□□□ 0.53
CCDC88AQ3V6T2 MIR4522-201ENST00000584932 87 ntBASIC18.35■□□□□ 0.53
CCDC88AQ3V6T2 AC011472.1-201ENST00000588634 569 ntTSL 4 BASIC18.35■□□□□ 0.53
CCDC88AQ3V6T2 AL161773.1-201ENST00000624845 863 ntBASIC18.35■□□□□ 0.53
CCDC88AQ3V6T2 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC88AQ3V6T2 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCDC88AQ3V6T2 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC88AQ3V6T2 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC88AQ3V6T2 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC88AQ3V6T2 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
CCDC88AQ3V6T2 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC88AQ3V6T2 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC88AQ3V6T2 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC88AQ3V6T2 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC88AQ3V6T2 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC18.34■□□□□ 0.53
CCDC88AQ3V6T2 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC18.34■□□□□ 0.53
CCDC88AQ3V6T2 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC18.34■□□□□ 0.53
CCDC88AQ3V6T2 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC88AQ3V6T2 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC88AQ3V6T2 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC88AQ3V6T2 TMBIM7P-203ENST00000641617 1718 ntBASIC18.34■□□□□ 0.53
CCDC88AQ3V6T2 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
CCDC88AQ3V6T2 TMEM242-201ENST00000367144 1030 ntTSL 2 BASIC18.34■□□□□ 0.53
CCDC88AQ3V6T2 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC88AQ3V6T2 CHCHD2-201ENST00000395422 901 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC88AQ3V6T2 AL357563.1-201ENST00000404728 395 ntBASIC18.34■□□□□ 0.53
CCDC88AQ3V6T2 AL591242.1-203ENST00000434329 374 ntTSL 3 BASIC18.34■□□□□ 0.53
CCDC88AQ3V6T2 AP000842.2-201ENST00000533033 517 ntTSL 4 BASIC18.34■□□□□ 0.53
CCDC88AQ3V6T2 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC88AQ3V6T2 AC012379.2-201ENST00000560237 765 ntTSL 2 BASIC18.34■□□□□ 0.53
CCDC88AQ3V6T2 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC18.34■□□□□ 0.53
CCDC88AQ3V6T2 AC008758.6-201ENST00000598753 588 ntAPPRIS P1 TSL 4 BASIC18.34■□□□□ 0.53
CCDC88AQ3V6T2 AL109837.1-201ENST00000603272 613 ntBASIC18.34■□□□□ 0.53
CCDC88AQ3V6T2 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC18.34■□□□□ 0.53
CCDC88AQ3V6T2 AC087481.3-201ENST00000602886 1894 ntBASIC18.34■□□□□ 0.53
CCDC88AQ3V6T2 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC88AQ3V6T2 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC88AQ3V6T2 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC88AQ3V6T2 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC88AQ3V6T2 AC015909.3-201ENST00000572855 1794 ntBASIC18.34■□□□□ 0.53
CCDC88AQ3V6T2 FHL2-206ENST00000408995 1367 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
CCDC88AQ3V6T2 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC88AQ3V6T2 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCDC88AQ3V6T2 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CCDC88AQ3V6T2 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CCDC88AQ3V6T2 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CCDC88AQ3V6T2 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC18.33■□□□□ 0.53
CCDC88AQ3V6T2 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CCDC88AQ3V6T2 AL627422.1-201ENST00000434104 580 ntBASIC18.33■□□□□ 0.53
CCDC88AQ3V6T2 REEP5-205ENST00000504247 480 ntTSL 5 BASIC18.33■□□□□ 0.53
CCDC88AQ3V6T2 REEP5-207ENST00000513339 1139 ntTSL 2 BASIC18.33■□□□□ 0.53
CCDC88AQ3V6T2 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CCDC88AQ3V6T2 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC18.33■□□□□ 0.53
CCDC88AQ3V6T2 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CCDC88AQ3V6T2 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CCDC88AQ3V6T2 PPP1R1B-202ENST00000394265 1419 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CCDC88AQ3V6T2 AL139384.1-201ENST00000612143 3047 ntBASIC18.33■□□□□ 0.53
CCDC88AQ3V6T2 MIR22HG-201ENST00000334146 1383 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CCDC88AQ3V6T2 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
CCDC88AQ3V6T2 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC18.33■□□□□ 0.52
CCDC88AQ3V6T2 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC18.33■□□□□ 0.52
CCDC88AQ3V6T2 AK6-201ENST00000380818 1183 ntTSL 2 BASIC18.33■□□□□ 0.52
CCDC88AQ3V6T2 TPM1-223ENST00000560445 485 ntTSL 3 BASIC18.33■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 73.5 ms