Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC144BQ3MJ40 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC17.81■□□□□ 0.44
CCDC144BQ3MJ40 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC17.81■□□□□ 0.44
CCDC144BQ3MJ40 MARS-233ENST00000628866 2583 ntTSL 5 BASIC17.81■□□□□ 0.44
CCDC144BQ3MJ40 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC144BQ3MJ40 C1QBPP1-201ENST00000400117 770 ntBASIC17.81■□□□□ 0.44
CCDC144BQ3MJ40 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC17.81■□□□□ 0.44
CCDC144BQ3MJ40 RPL7P3-201ENST00000441388 714 ntBASIC17.81■□□□□ 0.44
CCDC144BQ3MJ40 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC17.81■□□□□ 0.44
CCDC144BQ3MJ40 VDAC1P7-201ENST00000462417 847 ntBASIC17.81■□□□□ 0.44
CCDC144BQ3MJ40 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC144BQ3MJ40 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC17.81■□□□□ 0.44
CCDC144BQ3MJ40 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC17.81■□□□□ 0.44
CCDC144BQ3MJ40 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC144BQ3MJ40 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC17.81■□□□□ 0.44
CCDC144BQ3MJ40 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
CCDC144BQ3MJ40 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC17.81■□□□□ 0.44
CCDC144BQ3MJ40 LINC00528-201ENST00000600723 2160 ntBASIC17.81■□□□□ 0.44
CCDC144BQ3MJ40 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC144BQ3MJ40 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
CCDC144BQ3MJ40 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC17.81■□□□□ 0.44
CCDC144BQ3MJ40 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC144BQ3MJ40 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC144BQ3MJ40 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC144BQ3MJ40 PARN-202ENST00000420015 2360 ntTSL 2 BASIC17.81■□□□□ 0.44
CCDC144BQ3MJ40 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC144BQ3MJ40 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC144BQ3MJ40 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC144BQ3MJ40 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC144BQ3MJ40 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC144BQ3MJ40 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC17.81■□□□□ 0.44
CCDC144BQ3MJ40 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC17.8■□□□□ 0.44
CCDC144BQ3MJ40 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC144BQ3MJ40 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC144BQ3MJ40 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC17.8■□□□□ 0.44
CCDC144BQ3MJ40 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC144BQ3MJ40 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC17.8■□□□□ 0.44
CCDC144BQ3MJ40 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
CCDC144BQ3MJ40 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC17.8■□□□□ 0.44
CCDC144BQ3MJ40 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
CCDC144BQ3MJ40 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC144BQ3MJ40 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC144BQ3MJ40 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC17.8■□□□□ 0.44
CCDC144BQ3MJ40 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC144BQ3MJ40 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC144BQ3MJ40 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
CCDC144BQ3MJ40 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
CCDC144BQ3MJ40 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC144BQ3MJ40 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC144BQ3MJ40 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
CCDC144BQ3MJ40 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC144BQ3MJ40 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC17.8■□□□□ 0.44
CCDC144BQ3MJ40 AC136604.1-201ENST00000418535 575 ntBASIC17.8■□□□□ 0.44
CCDC144BQ3MJ40 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC17.8■□□□□ 0.44
CCDC144BQ3MJ40 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
CCDC144BQ3MJ40 RNA5SP412-201ENST00000516234 123 ntBASIC17.8■□□□□ 0.44
CCDC144BQ3MJ40 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC17.8■□□□□ 0.44
CCDC144BQ3MJ40 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC17.8■□□□□ 0.44
CCDC144BQ3MJ40 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC17.8■□□□□ 0.44
CCDC144BQ3MJ40 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC17.8■□□□□ 0.44
CCDC144BQ3MJ40 CLUHP6-201ENST00000580789 941 ntBASIC17.8■□□□□ 0.44
CCDC144BQ3MJ40 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC17.8■□□□□ 0.44
CCDC144BQ3MJ40 AL450472.2-201ENST00000603663 1156 ntBASIC17.8■□□□□ 0.44
CCDC144BQ3MJ40 GPR182-203ENST00000622922 591 ntBASIC17.8■□□□□ 0.44
CCDC144BQ3MJ40 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC144BQ3MJ40 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC17.8■□□□□ 0.44
CCDC144BQ3MJ40 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
CCDC144BQ3MJ40 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC144BQ3MJ40 ZEB1-AS1-208ENST00000607166 2503 ntBASIC17.8■□□□□ 0.44
CCDC144BQ3MJ40 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC144BQ3MJ40 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC144BQ3MJ40 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC144BQ3MJ40 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
CCDC144BQ3MJ40 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
CCDC144BQ3MJ40 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC144BQ3MJ40 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC144BQ3MJ40 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
CCDC144BQ3MJ40 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC144BQ3MJ40 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
CCDC144BQ3MJ40 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC144BQ3MJ40 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC144BQ3MJ40 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC144BQ3MJ40 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC144BQ3MJ40 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC17.79■□□□□ 0.44
CCDC144BQ3MJ40 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC144BQ3MJ40 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC144BQ3MJ40 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
CCDC144BQ3MJ40 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC17.79■□□□□ 0.44
CCDC144BQ3MJ40 GZMB-202ENST00000382540 816 ntTSL 5 BASIC17.79■□□□□ 0.44
CCDC144BQ3MJ40 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC144BQ3MJ40 AC092933.1-201ENST00000393644 945 ntBASIC17.79■□□□□ 0.44
CCDC144BQ3MJ40 HAUS4P1-201ENST00000406739 1145 ntBASIC17.79■□□□□ 0.44
CCDC144BQ3MJ40 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC17.79■□□□□ 0.44
CCDC144BQ3MJ40 AL355864.2-201ENST00000447420 863 ntBASIC17.79■□□□□ 0.44
CCDC144BQ3MJ40 FO681548.1-201ENST00000455617 1132 ntBASIC17.79■□□□□ 0.44
CCDC144BQ3MJ40 AC007551.1-201ENST00000457394 519 ntBASIC17.79■□□□□ 0.44
CCDC144BQ3MJ40 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC144BQ3MJ40 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC17.79■□□□□ 0.44
CCDC144BQ3MJ40 HNRNPUP1-201ENST00000554987 333 ntBASIC17.79■□□□□ 0.44
CCDC144BQ3MJ40 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 67.8 ms