Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
RFX4Q33E94 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
RFX4Q33E94 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
RFX4Q33E94 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
RFX4Q33E94 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.11
RFX4Q33E94 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC14.33□□□□□ -0.11
RFX4Q33E94 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.11
RFX4Q33E94 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
RFX4Q33E94 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.11
RFX4Q33E94 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
RFX4Q33E94 SLC9A7P1-202ENST00000556476 2239 ntBASIC14.33□□□□□ -0.12
RFX4Q33E94 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RFX4Q33E94 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RFX4Q33E94 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC14.33□□□□□ -0.12
RFX4Q33E94 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC14.33□□□□□ -0.12
RFX4Q33E94 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RFX4Q33E94 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
RFX4Q33E94 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
RFX4Q33E94 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
RFX4Q33E94 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RFX4Q33E94 HLA-H-201ENST00000383620 1096 ntBASIC14.33□□□□□ -0.12
RFX4Q33E94 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
RFX4Q33E94 AC136604.1-201ENST00000418535 575 ntBASIC14.33□□□□□ -0.12
RFX4Q33E94 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC14.33□□□□□ -0.12
RFX4Q33E94 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
RFX4Q33E94 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC14.33□□□□□ -0.12
RFX4Q33E94 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC14.33□□□□□ -0.12
RFX4Q33E94 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
RFX4Q33E94 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC14.33□□□□□ -0.12
RFX4Q33E94 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC14.33□□□□□ -0.12
RFX4Q33E94 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC14.33□□□□□ -0.12
RFX4Q33E94 LINC01225-203ENST00000563550 1244 ntBASIC14.33□□□□□ -0.12
RFX4Q33E94 AP000842.3-202ENST00000569238 1080 ntBASIC14.33□□□□□ -0.12
RFX4Q33E94 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC14.33□□□□□ -0.12
RFX4Q33E94 PIN1-206ENST00000587625 878 ntTSL 2 BASIC14.33□□□□□ -0.12
RFX4Q33E94 SSH2-211ENST00000590153 570 ntTSL 4 BASIC14.33□□□□□ -0.12
RFX4Q33E94 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC14.33□□□□□ -0.12
RFX4Q33E94 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC14.33□□□□□ -0.12
RFX4Q33E94 AC092902.6-201ENST00000641783 218 ntBASIC14.33□□□□□ -0.12
RFX4Q33E94 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RFX4Q33E94 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
RFX4Q33E94 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
RFX4Q33E94 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC14.33□□□□□ -0.12
RFX4Q33E94 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
RFX4Q33E94 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
RFX4Q33E94 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RFX4Q33E94 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
RFX4Q33E94 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
RFX4Q33E94 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC14.33□□□□□ -0.12
RFX4Q33E94 ITGB4-203ENST00000450894 5645 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
RFX4Q33E94 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC14.33□□□□□ -0.12
RFX4Q33E94 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
RFX4Q33E94 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
RFX4Q33E94 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC14.33□□□□□ -0.12
RFX4Q33E94 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC14.33□□□□□ -0.12
RFX4Q33E94 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
RFX4Q33E94 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
RFX4Q33E94 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
RFX4Q33E94 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC14.32□□□□□ -0.12
RFX4Q33E94 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC14.32□□□□□ -0.12
RFX4Q33E94 AC015656.1-201ENST00000624209 3578 ntBASIC14.32□□□□□ -0.12
RFX4Q33E94 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RFX4Q33E94 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
RFX4Q33E94 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
RFX4Q33E94 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC14.32□□□□□ -0.12
RFX4Q33E94 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC14.32□□□□□ -0.12
RFX4Q33E94 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC14.32□□□□□ -0.12
RFX4Q33E94 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC14.32□□□□□ -0.12
RFX4Q33E94 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
RFX4Q33E94 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
RFX4Q33E94 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC14.32□□□□□ -0.12
RFX4Q33E94 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
RFX4Q33E94 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC14.32□□□□□ -0.12
RFX4Q33E94 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC14.32□□□□□ -0.12
RFX4Q33E94 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC14.32□□□□□ -0.12
RFX4Q33E94 FAM58CP-201ENST00000435741 640 ntBASIC14.32□□□□□ -0.12
RFX4Q33E94 SPCS2P4-201ENST00000436160 681 ntBASIC14.32□□□□□ -0.12
RFX4Q33E94 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC14.32□□□□□ -0.12
RFX4Q33E94 SPDYE11-202ENST00000450699 704 ntBASIC14.32□□□□□ -0.12
RFX4Q33E94 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC14.32□□□□□ -0.12
RFX4Q33E94 SLC25A1P1-201ENST00000528351 927 ntBASIC14.32□□□□□ -0.12
RFX4Q33E94 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RFX4Q33E94 KRT8P23-201ENST00000560090 1207 ntBASIC14.32□□□□□ -0.12
RFX4Q33E94 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC14.32□□□□□ -0.12
RFX4Q33E94 SPDYE9P-201ENST00000570642 692 ntBASIC14.32□□□□□ -0.12
RFX4Q33E94 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
RFX4Q33E94 AC026120.1-201ENST00000611536 926 ntBASIC14.32□□□□□ -0.12
RFX4Q33E94 SPDYE10P-202ENST00000612005 668 ntBASIC14.32□□□□□ -0.12
RFX4Q33E94 SPDYE8P-202ENST00000612377 668 ntBASIC14.32□□□□□ -0.12
RFX4Q33E94 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
RFX4Q33E94 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC14.32□□□□□ -0.12
RFX4Q33E94 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RFX4Q33E94 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RFX4Q33E94 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC14.32□□□□□ -0.12
RFX4Q33E94 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
RFX4Q33E94 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RFX4Q33E94 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
RFX4Q33E94 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC14.32□□□□□ -0.12
RFX4Q33E94 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC14.32□□□□□ -0.12
RFX4Q33E94 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 72.8 ms