Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC17.26■□□□□ 0.35
TPM4P67936 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
TPM4P67936 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TPM4P67936 FHDC1-202ENST00000511601 6583 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
TPM4P67936 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TPM4P67936 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC17.25■□□□□ 0.35
TPM4P67936 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TPM4P67936 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TPM4P67936 DENND3-202ENST00000424248 4740 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TPM4P67936 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC17.25■□□□□ 0.35
TPM4P67936 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
TPM4P67936 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC17.25■□□□□ 0.35
TPM4P67936 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TPM4P67936 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TPM4P67936 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TPM4P67936 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TPM4P67936 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
TPM4P67936 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC17.25■□□□□ 0.35
TPM4P67936 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TPM4P67936 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TPM4P67936 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC17.25■□□□□ 0.35
TPM4P67936 NME4-207ENST00000450036 985 ntTSL 3 BASIC17.25■□□□□ 0.35
TPM4P67936 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC17.25■□□□□ 0.35
TPM4P67936 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC17.25■□□□□ 0.35
TPM4P67936 RNA5SP416-201ENST00000516838 111 ntBASIC17.25■□□□□ 0.35
TPM4P67936 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC17.25■□□□□ 0.35
TPM4P67936 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TPM4P67936 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC17.25■□□□□ 0.35
TPM4P67936 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC17.25■□□□□ 0.35
TPM4P67936 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
TPM4P67936 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC17.25■□□□□ 0.35
TPM4P67936 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TPM4P67936 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
TPM4P67936 AC091812.2-201ENST00000619081 385 ntBASIC17.25■□□□□ 0.35
TPM4P67936 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
TPM4P67936 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
TPM4P67936 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
TPM4P67936 OS9-204ENST00000389146 2091 ntTSL 2 BASIC17.25■□□□□ 0.35
TPM4P67936 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
TPM4P67936 DPYSL2-204ENST00000521913 4805 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TPM4P67936 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TPM4P67936 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC17.25■□□□□ 0.35
TPM4P67936 AC005840.4-201ENST00000541242 2494 ntBASIC17.25■□□□□ 0.35
TPM4P67936 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
TPM4P67936 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
TPM4P67936 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TPM4P67936 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
TPM4P67936 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TPM4P67936 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TPM4P67936 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC17.25■□□□□ 0.35
TPM4P67936 NRXN1-207ENST00000404971 7578 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TPM4P67936 AP000845.1-201ENST00000581677 2131 ntBASIC17.24■□□□□ 0.35
TPM4P67936 TNS2-219ENST00000552570 4714 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
TPM4P67936 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC17.24■□□□□ 0.35
TPM4P67936 ADAM11-201ENST00000200557 4571 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TPM4P67936 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC17.24■□□□□ 0.35
TPM4P67936 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TPM4P67936 AC117489.1-201ENST00000625169 3217 ntBASIC17.24■□□□□ 0.35
TPM4P67936 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TPM4P67936 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC17.24■□□□□ 0.35
TPM4P67936 SLC35D1-201ENST00000235345 6162 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TPM4P67936 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC17.24■□□□□ 0.35
TPM4P67936 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TPM4P67936 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TPM4P67936 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TPM4P67936 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC17.24■□□□□ 0.35
TPM4P67936 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC17.24■□□□□ 0.35
TPM4P67936 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
TPM4P67936 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.35
TPM4P67936 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TPM4P67936 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC17.24■□□□□ 0.35
TPM4P67936 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC17.24■□□□□ 0.35
TPM4P67936 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC17.24■□□□□ 0.35
TPM4P67936 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TPM4P67936 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC17.24■□□□□ 0.35
TPM4P67936 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC17.24■□□□□ 0.35
TPM4P67936 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TPM4P67936 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC17.24■□□□□ 0.35
TPM4P67936 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC17.24■□□□□ 0.35
TPM4P67936 AC131212.3-201ENST00000624087 4219 ntBASIC17.24■□□□□ 0.35
TPM4P67936 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC17.24■□□□□ 0.35
TPM4P67936 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.35
TPM4P67936 WASHC2C-201ENST00000336378 4669 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
TPM4P67936 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
TPM4P67936 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC17.24■□□□□ 0.35
TPM4P67936 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC17.24■□□□□ 0.35
TPM4P67936 AC012508.2-201ENST00000567613 1472 ntBASIC17.24■□□□□ 0.35
TPM4P67936 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC17.24■□□□□ 0.35
TPM4P67936 OAS3-201ENST00000228928 6719 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TPM4P67936 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
TPM4P67936 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC17.24■□□□□ 0.35
TPM4P67936 TRPM2-204ENST00000397932 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
TPM4P67936 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
TPM4P67936 AP3S2-216ENST00000617003 1561 ntBASIC17.23■□□□□ 0.35
TPM4P67936 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC17.23■□□□□ 0.35
TPM4P67936 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
TPM4P67936 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TPM4P67936 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TPM4P67936 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
TPM4P67936 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms