Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC15.11■□□□□ 0.01
LIMK1P53667 LINC01481-204ENST00000550216 494 ntTSL 2 BASIC15.11■□□□□ 0.01
LIMK1P53667 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC15.11■□□□□ 0.01
LIMK1P53667 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC15.11■□□□□ 0.01
LIMK1P53667 TBCB-211ENST00000589996 724 ntTSL 3 BASIC15.11■□□□□ 0.01
LIMK1P53667 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC15.11■□□□□ 0.01
LIMK1P53667 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC15.11■□□□□ 0.01
LIMK1P53667 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC15.11■□□□□ 0.01
LIMK1P53667 AC011491.1-203ENST00000637688 543 ntBASIC15.11■□□□□ 0.01
LIMK1P53667 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC15.11■□□□□ 0.01
LIMK1P53667 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LIMK1P53667 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
LIMK1P53667 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LIMK1P53667 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
LIMK1P53667 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
LIMK1P53667 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LIMK1P53667 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC15.11■□□□□ 0.01
LIMK1P53667 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC15.11■□□□□ 0.01
LIMK1P53667 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
LIMK1P53667 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
LIMK1P53667 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
LIMK1P53667 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
LIMK1P53667 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LIMK1P53667 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC15.1■□□□□ 0.01
LIMK1P53667 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LIMK1P53667 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
LIMK1P53667 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC15.1■□□□□ 0.01
LIMK1P53667 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC15.1■□□□□ 0.01
LIMK1P53667 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
LIMK1P53667 AL138799.1-201ENST00000448213 1675 ntBASIC15.1■□□□□ 0.01
LIMK1P53667 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LIMK1P53667 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
LIMK1P53667 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC15.1■□□□□ 0.01
LIMK1P53667 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LIMK1P53667 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC15.1■□□□□ 0.01
LIMK1P53667 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
LIMK1P53667 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC15.1■□□□□ 0.01
LIMK1P53667 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
LIMK1P53667 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC15.1■□□□□ 0.01
LIMK1P53667 CROCCP1-201ENST00000426910 5675 ntBASIC15.1■□□□□ 0.01
LIMK1P53667 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LIMK1P53667 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
LIMK1P53667 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
LIMK1P53667 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LIMK1P53667 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC15.1■□□□□ 0.01
LIMK1P53667 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
LIMK1P53667 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC15.1■□□□□ 0.01
LIMK1P53667 AC114812.1-204ENST00000449669 728 ntBASIC15.1■□□□□ 0.01
LIMK1P53667 AC005740.2-201ENST00000511085 419 ntBASIC15.1■□□□□ 0.01
LIMK1P53667 NCK2-206ENST00000522586 490 ntTSL 5 BASIC15.1■□□□□ 0.01
LIMK1P53667 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC15.1■□□□□ 0.01
LIMK1P53667 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
LIMK1P53667 COX6A1P2-201ENST00000620597 330 ntBASIC15.1■□□□□ 0.01
LIMK1P53667 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC15.1■□□□□ 0.01
LIMK1P53667 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
LIMK1P53667 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC15.1■□□□□ 0.01
LIMK1P53667 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LIMK1P53667 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
LIMK1P53667 AL592424.1-201ENST00000563624 1536 ntBASIC15.1■□□□□ 0.01
LIMK1P53667 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC15.1■□□□□ 0.01
LIMK1P53667 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
LIMK1P53667 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LIMK1P53667 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
LIMK1P53667 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
LIMK1P53667 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LIMK1P53667 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LIMK1P53667 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC15.1■□□□□ 0.01
LIMK1P53667 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC15.1■□□□□ 0.01
LIMK1P53667 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
LIMK1P53667 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LIMK1P53667 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC15.09■□□□□ 0.01
LIMK1P53667 GGT3P-204ENST00000453783 1664 ntBASIC15.09■□□□□ 0.01
LIMK1P53667 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC15.09■□□□□ 0.01
LIMK1P53667 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
LIMK1P53667 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC15.09■□□□□ 0.01
LIMK1P53667 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
LIMK1P53667 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
LIMK1P53667 AP001282.1-201ENST00000531301 1499 ntBASIC15.09■□□□□ 0.01
LIMK1P53667 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
LIMK1P53667 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
LIMK1P53667 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC15.09■□□□□ 0.01
LIMK1P53667 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LIMK1P53667 TNNT2-206ENST00000367320 1007 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
LIMK1P53667 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC15.09■□□□□ 0.01
LIMK1P53667 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
LIMK1P53667 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
LIMK1P53667 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
LIMK1P53667 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC15.09■□□□□ 0.01
LIMK1P53667 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC15.09■□□□□ 0.01
LIMK1P53667 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC15.09■□□□□ 0.01
LIMK1P53667 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC15.09■□□□□ 0.01
LIMK1P53667 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LIMK1P53667 AL023803.2-201ENST00000620080 638 ntBASIC15.09■□□□□ 0.01
LIMK1P53667 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
LIMK1P53667 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC15.09■□□□□ 0.01
LIMK1P53667 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC15.09■□□□□ 0.01
LIMK1P53667 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC15.09■□□□□ 0.01
LIMK1P53667 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LIMK1P53667 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LIMK1P53667 TK1-203ENST00000588734 1681 ntTSL 2 BASIC15.09■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms