Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC16.17■□□□□ 0.18
LHX1P48742 MFF-223ENST00000524634 647 ntTSL 2 BASIC16.17■□□□□ 0.18
LHX1P48742 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
LHX1P48742 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC16.17■□□□□ 0.18
LHX1P48742 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC16.17■□□□□ 0.18
LHX1P48742 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC16.17■□□□□ 0.18
LHX1P48742 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
LHX1P48742 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LHX1P48742 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LHX1P48742 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC16.17■□□□□ 0.18
LHX1P48742 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LHX1P48742 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC16.17■□□□□ 0.18
LHX1P48742 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
LHX1P48742 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
LHX1P48742 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
LHX1P48742 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LHX1P48742 FLJ16779-201ENST00000612722 7638 ntBASIC16.17■□□□□ 0.18
LHX1P48742 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LHX1P48742 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LHX1P48742 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
LHX1P48742 AL162727.3-201ENST00000635661 2787 ntBASIC16.16■□□□□ 0.18
LHX1P48742 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LHX1P48742 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC16.16■□□□□ 0.18
LHX1P48742 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LHX1P48742 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC16.16■□□□□ 0.18
LHX1P48742 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
LHX1P48742 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC16.16■□□□□ 0.18
LHX1P48742 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LHX1P48742 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC16.16■□□□□ 0.18
LHX1P48742 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
LHX1P48742 AC026954.1-201ENST00000429771 1293 ntBASIC16.16■□□□□ 0.18
LHX1P48742 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC16.16■□□□□ 0.18
LHX1P48742 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
LHX1P48742 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC16.16■□□□□ 0.18
LHX1P48742 RNA5SP412-201ENST00000516234 123 ntBASIC16.16■□□□□ 0.18
LHX1P48742 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC16.16■□□□□ 0.18
LHX1P48742 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LHX1P48742 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LHX1P48742 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
LHX1P48742 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
LHX1P48742 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
LHX1P48742 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC16.16■□□□□ 0.18
LHX1P48742 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC16.16■□□□□ 0.18
LHX1P48742 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LHX1P48742 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
LHX1P48742 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
LHX1P48742 AHCYP2-201ENST00000430630 1300 ntBASIC16.16■□□□□ 0.18
LHX1P48742 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC16.16■□□□□ 0.18
LHX1P48742 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC16.16■□□□□ 0.18
LHX1P48742 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC16.16■□□□□ 0.18
LHX1P48742 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC16.15■□□□□ 0.18
LHX1P48742 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
LHX1P48742 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC16.15■□□□□ 0.18
LHX1P48742 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LHX1P48742 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC16.15■□□□□ 0.18
LHX1P48742 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
LHX1P48742 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC16.15■□□□□ 0.18
LHX1P48742 PPT1-215ENST00000641471 2368 ntBASIC16.15■□□□□ 0.18
LHX1P48742 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LHX1P48742 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
LHX1P48742 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
LHX1P48742 AP000845.1-201ENST00000581677 2131 ntBASIC16.15■□□□□ 0.18
LHX1P48742 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
LHX1P48742 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
LHX1P48742 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
LHX1P48742 MPV17-205ENST00000402310 906 ntTSL 5 BASIC16.15■□□□□ 0.18
LHX1P48742 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
LHX1P48742 FAM21FP-201ENST00000426241 1131 ntBASIC16.15■□□□□ 0.18
LHX1P48742 YBX1P6-201ENST00000442962 1002 ntBASIC16.15■□□□□ 0.18
LHX1P48742 BNIP3P42-201ENST00000454982 569 ntBASIC16.15■□□□□ 0.18
LHX1P48742 AL590640.2-201ENST00000457038 527 ntBASIC16.15■□□□□ 0.18
LHX1P48742 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC16.15■□□□□ 0.18
LHX1P48742 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC16.15■□□□□ 0.18
LHX1P48742 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC16.15■□□□□ 0.18
LHX1P48742 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC16.15■□□□□ 0.18
LHX1P48742 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC16.15■□□□□ 0.18
LHX1P48742 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC16.15■□□□□ 0.18
LHX1P48742 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
LHX1P48742 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
LHX1P48742 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
LHX1P48742 BNIP3P29-201ENST00000598302 571 ntBASIC16.15■□□□□ 0.18
LHX1P48742 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC16.15■□□□□ 0.18
LHX1P48742 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
LHX1P48742 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC16.15■□□□□ 0.18
LHX1P48742 AC011447.5-201ENST00000616168 564 ntBASIC16.15■□□□□ 0.18
LHX1P48742 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
LHX1P48742 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
LHX1P48742 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
LHX1P48742 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
LHX1P48742 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC16.15■□□□□ 0.18
LHX1P48742 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LHX1P48742 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
LHX1P48742 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC16.15■□□□□ 0.18
LHX1P48742 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LHX1P48742 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC16.15■□□□□ 0.18
LHX1P48742 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC16.14■□□□□ 0.18
LHX1P48742 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
LHX1P48742 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC16.14■□□□□ 0.18
LHX1P48742 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
LHX1P48742 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms