Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 SLC9A7P1-202ENST00000556476 2239 ntBASIC16.14■□□□□ 0.17
BDNFP23560 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
BDNFP23560 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
BDNFP23560 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
BDNFP23560 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC16.13■□□□□ 0.17
BDNFP23560 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
BDNFP23560 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC16.13■□□□□ 0.17
BDNFP23560 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
BDNFP23560 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC16.13■□□□□ 0.17
BDNFP23560 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
BDNFP23560 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
BDNFP23560 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
BDNFP23560 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC16.13■□□□□ 0.17
BDNFP23560 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
BDNFP23560 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC16.13■□□□□ 0.17
BDNFP23560 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
BDNFP23560 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
BDNFP23560 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
BDNFP23560 GUK1-206ENST00000366723 845 ntTSL 5 BASIC16.13■□□□□ 0.17
BDNFP23560 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
BDNFP23560 LSM5-207ENST00000410044 687 ntTSL 3 BASIC16.13■□□□□ 0.17
BDNFP23560 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
BDNFP23560 AC026954.1-201ENST00000429771 1293 ntBASIC16.13■□□□□ 0.17
BDNFP23560 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
BDNFP23560 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC16.13■□□□□ 0.17
BDNFP23560 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC16.13■□□□□ 0.17
BDNFP23560 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC16.13■□□□□ 0.17
BDNFP23560 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC16.13■□□□□ 0.17
BDNFP23560 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC16.13■□□□□ 0.17
BDNFP23560 AC132938.4-201ENST00000623835 848 ntBASIC16.13■□□□□ 0.17
BDNFP23560 RHOXF1P1-202ENST00000635473 501 ntBASIC16.13■□□□□ 0.17
BDNFP23560 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
BDNFP23560 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
BDNFP23560 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
BDNFP23560 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
BDNFP23560 REXO1L4P-201ENST00000605109 1937 ntBASIC16.13■□□□□ 0.17
BDNFP23560 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
BDNFP23560 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
BDNFP23560 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
BDNFP23560 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
BDNFP23560 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
BDNFP23560 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
BDNFP23560 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC16.12■□□□□ 0.17
BDNFP23560 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
BDNFP23560 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
BDNFP23560 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC16.12■□□□□ 0.17
BDNFP23560 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
BDNFP23560 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
BDNFP23560 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
BDNFP23560 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
BDNFP23560 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
BDNFP23560 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
BDNFP23560 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
BDNFP23560 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
BDNFP23560 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
BDNFP23560 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
BDNFP23560 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
BDNFP23560 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
BDNFP23560 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
BDNFP23560 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
BDNFP23560 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
BDNFP23560 B9D1-203ENST00000395615 805 ntTSL 3 BASIC16.12■□□□□ 0.17
BDNFP23560 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
BDNFP23560 HLA-K-203ENST00000430151 1046 ntBASIC16.12■□□□□ 0.17
BDNFP23560 EIF3FP3-201ENST00000434851 1086 ntBASIC16.12■□□□□ 0.17
BDNFP23560 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC16.12■□□□□ 0.17
BDNFP23560 AL590640.2-201ENST00000457038 527 ntBASIC16.12■□□□□ 0.17
BDNFP23560 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC16.12■□□□□ 0.17
BDNFP23560 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC16.12■□□□□ 0.17
BDNFP23560 AC078819.1-201ENST00000547454 765 ntBASIC16.12■□□□□ 0.17
BDNFP23560 AC012085.1-201ENST00000548270 765 ntBASIC16.12■□□□□ 0.17
BDNFP23560 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
BDNFP23560 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC16.12■□□□□ 0.17
BDNFP23560 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC16.12■□□□□ 0.17
BDNFP23560 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC16.12■□□□□ 0.17
BDNFP23560 ETV2-208ENST00000621247 941 ntTSL 5 BASIC16.12■□□□□ 0.17
BDNFP23560 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC16.12■□□□□ 0.17
BDNFP23560 AC023024.2-201ENST00000623561 1993 ntBASIC16.12■□□□□ 0.17
BDNFP23560 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC16.12■□□□□ 0.17
BDNFP23560 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
BDNFP23560 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
BDNFP23560 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
BDNFP23560 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
BDNFP23560 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
BDNFP23560 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
BDNFP23560 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
BDNFP23560 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
BDNFP23560 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
BDNFP23560 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
BDNFP23560 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
BDNFP23560 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
BDNFP23560 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
BDNFP23560 KRT8P44-201ENST00000441609 1350 ntBASIC16.12■□□□□ 0.17
BDNFP23560 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC16.12■□□□□ 0.17
BDNFP23560 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
BDNFP23560 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
BDNFP23560 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
BDNFP23560 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
BDNFP23560 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
BDNFP23560 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 58.6 ms