Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL5A1P20908 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC14.37□□□□□ -0.11
COL5A1P20908 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC14.37□□□□□ -0.11
COL5A1P20908 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
COL5A1P20908 AC245100.1-201ENST00000452996 1331 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
COL5A1P20908 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
COL5A1P20908 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
COL5A1P20908 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC14.37□□□□□ -0.11
COL5A1P20908 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
COL5A1P20908 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
COL5A1P20908 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
COL5A1P20908 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC14.36□□□□□ -0.11
COL5A1P20908 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC14.36□□□□□ -0.11
COL5A1P20908 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
COL5A1P20908 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
COL5A1P20908 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC14.36□□□□□ -0.11
COL5A1P20908 AC243961.1-201ENST00000432559 384 ntTSL 5 BASIC14.36□□□□□ -0.11
COL5A1P20908 AL365295.1-203ENST00000435322 566 ntTSL 4 BASIC14.36□□□□□ -0.11
COL5A1P20908 AC245056.1-201ENST00000437631 384 ntTSL 5 BASIC14.36□□□□□ -0.11
COL5A1P20908 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC14.36□□□□□ -0.11
COL5A1P20908 SOX9-AS1-207ENST00000446332 443 ntTSL 2 BASIC14.36□□□□□ -0.11
COL5A1P20908 UBXN1-214ENST00000533000 367 ntTSL 5 BASIC14.36□□□□□ -0.11
COL5A1P20908 RPS15-202ENST00000585665 467 ntTSL 3 BASIC14.36□□□□□ -0.11
COL5A1P20908 AC111170.1-201ENST00000591110 1132 ntTSL 3 BASIC14.36□□□□□ -0.11
COL5A1P20908 WT1-AS_6.1-201ENST00000614919 121 ntBASIC14.36□□□□□ -0.11
COL5A1P20908 HLA-C-210ENST00000640219 976 ntBASIC14.36□□□□□ -0.11
COL5A1P20908 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC14.36□□□□□ -0.11
COL5A1P20908 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL5A1P20908 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC14.36□□□□□ -0.11
COL5A1P20908 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
COL5A1P20908 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL5A1P20908 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
COL5A1P20908 FAM90A2P-201ENST00000511144 1395 ntBASIC14.36□□□□□ -0.11
COL5A1P20908 FAM90A25P-201ENST00000528404 1395 ntBASIC14.36□□□□□ -0.11
COL5A1P20908 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
COL5A1P20908 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL5A1P20908 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
COL5A1P20908 AC020910.5-201ENST00000623668 1865 ntBASIC14.36□□□□□ -0.11
COL5A1P20908 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
COL5A1P20908 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL5A1P20908 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL5A1P20908 DDX39A-201ENST00000242776 1471 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL5A1P20908 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC14.36□□□□□ -0.11
COL5A1P20908 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL5A1P20908 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC14.36□□□□□ -0.11
COL5A1P20908 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL5A1P20908 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL5A1P20908 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
COL5A1P20908 SSR4P1-203ENST00000599569 2260 ntBASIC14.36□□□□□ -0.11
COL5A1P20908 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC14.36□□□□□ -0.11
COL5A1P20908 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC14.36□□□□□ -0.11
COL5A1P20908 AL645933.1-201ENST00000440087 609 ntBASIC14.36□□□□□ -0.11
COL5A1P20908 IL1R2-203ENST00000441002 1106 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
COL5A1P20908 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC14.36□□□□□ -0.11
COL5A1P20908 KRT18P66-201ENST00000452970 1269 ntBASIC14.36□□□□□ -0.11
COL5A1P20908 CCNC-217ENST00000523985 958 ntTSL 2 BASIC14.36□□□□□ -0.11
COL5A1P20908 AC073573.1-201ENST00000550908 481 ntTSL 3 BASIC14.36□□□□□ -0.11
COL5A1P20908 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC14.36□□□□□ -0.11
COL5A1P20908 DNM1P30-201ENST00000563586 452 ntBASIC14.36□□□□□ -0.11
COL5A1P20908 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
COL5A1P20908 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC14.36□□□□□ -0.11
COL5A1P20908 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC14.36□□□□□ -0.11
COL5A1P20908 MIR6720-201ENST00000611664 98 ntBASIC14.36□□□□□ -0.11
COL5A1P20908 AC242376.2-201ENST00000619355 883 ntBASIC14.36□□□□□ -0.11
COL5A1P20908 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC14.36□□□□□ -0.11
COL5A1P20908 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
COL5A1P20908 AC012508.2-201ENST00000567613 1472 ntBASIC14.35□□□□□ -0.11
COL5A1P20908 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
COL5A1P20908 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC14.35□□□□□ -0.11
COL5A1P20908 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC14.35□□□□□ -0.11
COL5A1P20908 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
COL5A1P20908 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
COL5A1P20908 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL5A1P20908 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC14.35□□□□□ -0.11
COL5A1P20908 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL5A1P20908 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC14.35□□□□□ -0.11
COL5A1P20908 AL137783.1-201ENST00000623494 1896 ntBASIC14.35□□□□□ -0.11
COL5A1P20908 AC008894.3-201ENST00000624324 3103 ntBASIC14.35□□□□□ -0.11
COL5A1P20908 AC126365.1-201ENST00000578585 1514 ntBASIC14.35□□□□□ -0.11
COL5A1P20908 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL5A1P20908 AC105917.1-201ENST00000506637 2539 ntBASIC14.35□□□□□ -0.11
COL5A1P20908 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC14.35□□□□□ -0.11
COL5A1P20908 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC14.35□□□□□ -0.11
COL5A1P20908 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC14.35□□□□□ -0.11
COL5A1P20908 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
COL5A1P20908 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL5A1P20908 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
COL5A1P20908 AC239868.1-201ENST00000369385 493 ntBASIC14.35□□□□□ -0.11
COL5A1P20908 NCR3-202ENST00000376071 541 ntTSL 5 BASIC14.35□□□□□ -0.11
COL5A1P20908 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
COL5A1P20908 UBXN7-AS1-201ENST00000442941 386 ntTSL 3 BASIC14.35□□□□□ -0.11
COL5A1P20908 SIAH2-AS1-201ENST00000461943 441 ntTSL 4 BASIC14.35□□□□□ -0.11
COL5A1P20908 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC14.35□□□□□ -0.11
COL5A1P20908 AC006122.1-201ENST00000493323 440 ntBASIC14.35□□□□□ -0.11
COL5A1P20908 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL5A1P20908 PLEKHA8P1-203ENST00000545609 277 ntTSL 3 BASIC14.35□□□□□ -0.11
COL5A1P20908 PGAM1P5-201ENST00000548011 764 ntBASIC14.35□□□□□ -0.11
COL5A1P20908 VPS18-202ENST00000558474 873 ntTSL 3 BASIC14.35□□□□□ -0.11
COL5A1P20908 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC14.35□□□□□ -0.11
COL5A1P20908 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms