Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC18.09■□□□□ 0.49
HMGB1P09429 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.49
HMGB1P09429 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
HMGB1P09429 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
HMGB1P09429 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
HMGB1P09429 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
HMGB1P09429 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC18.08■□□□□ 0.49
HMGB1P09429 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC18.08■□□□□ 0.49
HMGB1P09429 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC18.08■□□□□ 0.49
HMGB1P09429 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
HMGB1P09429 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
HMGB1P09429 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
HMGB1P09429 CALY-202ENST00000368555 783 ntTSL 2 BASIC18.08■□□□□ 0.48
HMGB1P09429 C1QBPP1-201ENST00000400117 770 ntBASIC18.08■□□□□ 0.48
HMGB1P09429 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
HMGB1P09429 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC18.08■□□□□ 0.48
HMGB1P09429 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC18.08■□□□□ 0.48
HMGB1P09429 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC18.08■□□□□ 0.48
HMGB1P09429 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC18.08■□□□□ 0.48
HMGB1P09429 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC18.08■□□□□ 0.48
HMGB1P09429 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
HMGB1P09429 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
HMGB1P09429 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
HMGB1P09429 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
HMGB1P09429 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
HMGB1P09429 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
HMGB1P09429 AP002414.2-201ENST00000591780 3365 ntBASIC18.08■□□□□ 0.48
HMGB1P09429 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC18.08■□□□□ 0.48
HMGB1P09429 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
HMGB1P09429 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC18.08■□□□□ 0.48
HMGB1P09429 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HMGB1P09429 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
HMGB1P09429 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HMGB1P09429 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HMGB1P09429 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
HMGB1P09429 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
HMGB1P09429 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HMGB1P09429 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
HMGB1P09429 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
HMGB1P09429 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
HMGB1P09429 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HMGB1P09429 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
HMGB1P09429 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HMGB1P09429 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
HMGB1P09429 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HMGB1P09429 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
HMGB1P09429 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HMGB1P09429 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
HMGB1P09429 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
HMGB1P09429 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC18.07■□□□□ 0.48
HMGB1P09429 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC18.07■□□□□ 0.48
HMGB1P09429 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC18.07■□□□□ 0.48
HMGB1P09429 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HMGB1P09429 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
HMGB1P09429 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC18.07■□□□□ 0.48
HMGB1P09429 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC18.07■□□□□ 0.48
HMGB1P09429 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC18.07■□□□□ 0.48
HMGB1P09429 RN7SL204P-201ENST00000582831 262 ntBASIC18.07■□□□□ 0.48
HMGB1P09429 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC18.07■□□□□ 0.48
HMGB1P09429 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
HMGB1P09429 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC18.07■□□□□ 0.48
HMGB1P09429 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
HMGB1P09429 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC18.07■□□□□ 0.48
HMGB1P09429 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC18.07■□□□□ 0.48
HMGB1P09429 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
HMGB1P09429 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
HMGB1P09429 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
HMGB1P09429 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HMGB1P09429 PES1-204ENST00000402284 2144 ntTSL 5 BASIC18.07■□□□□ 0.48
HMGB1P09429 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
HMGB1P09429 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HMGB1P09429 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
HMGB1P09429 KRT8P22-201ENST00000562317 1415 ntBASIC18.06■□□□□ 0.48
HMGB1P09429 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HMGB1P09429 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC18.06■□□□□ 0.48
HMGB1P09429 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC18.06■□□□□ 0.48
HMGB1P09429 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC18.06■□□□□ 0.48
HMGB1P09429 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HMGB1P09429 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC18.06■□□□□ 0.48
HMGB1P09429 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
HMGB1P09429 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HMGB1P09429 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HMGB1P09429 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HMGB1P09429 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HMGB1P09429 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HMGB1P09429 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HMGB1P09429 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC18.06■□□□□ 0.48
HMGB1P09429 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HMGB1P09429 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HMGB1P09429 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
HMGB1P09429 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC18.06■□□□□ 0.48
HMGB1P09429 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HMGB1P09429 SOCS2P1-201ENST00000417727 557 ntBASIC18.06■□□□□ 0.48
HMGB1P09429 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC18.06■□□□□ 0.48
HMGB1P09429 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC18.06■□□□□ 0.48
HMGB1P09429 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC18.06■□□□□ 0.48
HMGB1P09429 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC18.06■□□□□ 0.48
HMGB1P09429 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC18.06■□□□□ 0.48
HMGB1P09429 AC124283.3-201ENST00000570869 594 ntBASIC18.06■□□□□ 0.48
HMGB1P09429 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC18.06■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms