Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
APOEP02649 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
APOEP02649 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
APOEP02649 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
APOEP02649 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
APOEP02649 NME2-201ENST00000393183 568 ntTSL 2 BASIC16.11■□□□□ 0.17
APOEP02649 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
APOEP02649 C1QBPP1-201ENST00000400117 770 ntBASIC16.11■□□□□ 0.17
APOEP02649 SUN1-204ENST00000403868 978 ntTSL 2 BASIC16.11■□□□□ 0.17
APOEP02649 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
APOEP02649 SOCS2P1-201ENST00000417727 557 ntBASIC16.11■□□□□ 0.17
APOEP02649 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
APOEP02649 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC16.11■□□□□ 0.17
APOEP02649 PNKD-204ENST00000436005 978 ntTSL 5 BASIC16.11■□□□□ 0.17
APOEP02649 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC16.11■□□□□ 0.17
APOEP02649 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC16.11■□□□□ 0.17
APOEP02649 NEU3-203ENST00000529024 581 ntTSL 3 BASIC16.11■□□□□ 0.17
APOEP02649 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC16.11■□□□□ 0.17
APOEP02649 AC120045.2-201ENST00000567334 178 ntBASIC16.11■□□□□ 0.17
APOEP02649 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC16.11■□□□□ 0.17
APOEP02649 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC16.11■□□□□ 0.17
APOEP02649 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC16.11■□□□□ 0.17
APOEP02649 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
APOEP02649 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC16.11■□□□□ 0.17
APOEP02649 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
APOEP02649 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
APOEP02649 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC16.11■□□□□ 0.17
APOEP02649 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
APOEP02649 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
APOEP02649 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
APOEP02649 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
APOEP02649 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
APOEP02649 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
APOEP02649 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
APOEP02649 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC16.11■□□□□ 0.17
APOEP02649 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC16.11■□□□□ 0.17
APOEP02649 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
APOEP02649 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
APOEP02649 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC16.11■□□□□ 0.17
APOEP02649 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
APOEP02649 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC16.11■□□□□ 0.17
APOEP02649 MECR-202ENST00000373791 2416 ntTSL 2 BASIC16.1■□□□□ 0.17
APOEP02649 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
APOEP02649 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
APOEP02649 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
APOEP02649 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
APOEP02649 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
APOEP02649 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
APOEP02649 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
APOEP02649 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
APOEP02649 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC16.1■□□□□ 0.17
APOEP02649 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
APOEP02649 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
APOEP02649 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
APOEP02649 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC16.1■□□□□ 0.17
APOEP02649 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
APOEP02649 AL162726.2-201ENST00000438986 1017 ntBASIC16.1■□□□□ 0.17
APOEP02649 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC16.1■□□□□ 0.17
APOEP02649 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC16.1■□□□□ 0.17
APOEP02649 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC16.1■□□□□ 0.17
APOEP02649 PFN2-205ENST00000461868 613 ntTSL 2 BASIC16.1■□□□□ 0.17
APOEP02649 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
APOEP02649 POLE2-203ENST00000553805 496 ntTSL 2 BASIC16.1■□□□□ 0.17
APOEP02649 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC16.1■□□□□ 0.17
APOEP02649 AL359711.2-201ENST00000563105 872 ntBASIC16.1■□□□□ 0.17
APOEP02649 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC16.1■□□□□ 0.17
APOEP02649 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC16.1■□□□□ 0.17
APOEP02649 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
APOEP02649 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
APOEP02649 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC16.1■□□□□ 0.17
APOEP02649 AL033527.5-201ENST00000641382 801 ntBASIC16.1■□□□□ 0.17
APOEP02649 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
APOEP02649 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC16.1■□□□□ 0.17
APOEP02649 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
APOEP02649 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
APOEP02649 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
APOEP02649 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC16.1■□□□□ 0.17
APOEP02649 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
APOEP02649 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC16.1■□□□□ 0.17
APOEP02649 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
APOEP02649 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
APOEP02649 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
APOEP02649 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
APOEP02649 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
APOEP02649 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC16.1■□□□□ 0.17
APOEP02649 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
APOEP02649 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
APOEP02649 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC16.1■□□□□ 0.17
APOEP02649 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
APOEP02649 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC16.09■□□□□ 0.17
APOEP02649 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
APOEP02649 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
APOEP02649 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
APOEP02649 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
APOEP02649 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
APOEP02649 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
APOEP02649 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC16.09■□□□□ 0.17
APOEP02649 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC16.09■□□□□ 0.17
APOEP02649 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
APOEP02649 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 60.4 ms