Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 LINC02018-201ENST00000608169 1268 ntTSL 4 BASIC20.95■□□□□ 0.94
NPHP4O75161 PPIA-210ENST00000620047 827 ntTSL 5 BASIC20.95■□□□□ 0.94
NPHP4O75161 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
NPHP4O75161 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
NPHP4O75161 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
NPHP4O75161 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
NPHP4O75161 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
NPHP4O75161 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
NPHP4O75161 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
NPHP4O75161 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC20.94■□□□□ 0.94
NPHP4O75161 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
NPHP4O75161 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
NPHP4O75161 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
NPHP4O75161 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC20.94■□□□□ 0.94
NPHP4O75161 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
NPHP4O75161 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
NPHP4O75161 OXA1L-212ENST00000604262 1571 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
NPHP4O75161 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC20.94■□□□□ 0.94
NPHP4O75161 PSTPIP1-207ENST00000559295 1349 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
NPHP4O75161 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
NPHP4O75161 TMBIM7P-202ENST00000641474 1516 ntBASIC20.94■□□□□ 0.94
NPHP4O75161 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
NPHP4O75161 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
NPHP4O75161 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
NPHP4O75161 AC093673.1-201ENST00000429630 648 ntTSL 2 BASIC20.94■□□□□ 0.94
NPHP4O75161 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC20.94■□□□□ 0.94
NPHP4O75161 LINC01278-201ENST00000433061 529 ntTSL 3 BASIC20.94■□□□□ 0.94
NPHP4O75161 TIMM17B-204ENST00000465150 964 ntTSL 2 BASIC20.94■□□□□ 0.94
NPHP4O75161 GCOM2-201ENST00000509133 1104 ntBASIC20.94■□□□□ 0.94
NPHP4O75161 RAP1B-216ENST00000537460 1072 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
NPHP4O75161 AC068867.1-201ENST00000559855 150 ntBASIC20.94■□□□□ 0.94
NPHP4O75161 RN7SL357P-201ENST00000581065 298 ntBASIC20.94■□□□□ 0.94
NPHP4O75161 LINC01278-206ENST00000610088 554 ntTSL 4 BASIC20.94■□□□□ 0.94
NPHP4O75161 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC20.94■□□□□ 0.94
NPHP4O75161 KRT33A-201ENST00000007735 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
NPHP4O75161 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
NPHP4O75161 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
NPHP4O75161 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC20.93■□□□□ 0.94
NPHP4O75161 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC20.93■□□□□ 0.94
NPHP4O75161 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
NPHP4O75161 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
NPHP4O75161 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
NPHP4O75161 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC20.93■□□□□ 0.94
NPHP4O75161 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
NPHP4O75161 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC20.93■□□□□ 0.94
NPHP4O75161 VAMP2-202ENST00000404970 1479 ntTSL 2 BASIC20.93■□□□□ 0.94
NPHP4O75161 ATP5S-203ENST00000358473 801 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
NPHP4O75161 NME4-203ENST00000397722 1232 ntTSL 2 BASIC20.93■□□□□ 0.94
NPHP4O75161 ERP29P1-201ENST00000442902 706 ntBASIC20.93■□□□□ 0.94
NPHP4O75161 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
NPHP4O75161 AC034231.1-201ENST00000507251 537 ntTSL 4 BASIC20.93■□□□□ 0.94
NPHP4O75161 AC106047.2-201ENST00000511723 743 ntBASIC20.93■□□□□ 0.94
NPHP4O75161 PRR7-AS1-204ENST00000514846 543 ntTSL 2 BASIC20.93■□□□□ 0.94
NPHP4O75161 ABHD17AP9-201ENST00000561925 548 ntBASIC20.93■□□□□ 0.94
NPHP4O75161 HERC2P11-201ENST00000562845 725 ntBASIC20.93■□□□□ 0.94
NPHP4O75161 AC100756.2-201ENST00000569537 736 ntBASIC20.93■□□□□ 0.94
NPHP4O75161 AC010504.1-201ENST00000591311 585 ntTSL 3 BASIC20.93■□□□□ 0.94
NPHP4O75161 AL136040.2-201ENST00000618431 1130 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
NPHP4O75161 AC106774.7-201ENST00000638408 597 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
NPHP4O75161 AC106774.6-201ENST00000638483 597 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
NPHP4O75161 AC233724.20-201ENST00000638842 597 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
NPHP4O75161 AC233724.19-201ENST00000639969 597 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
NPHP4O75161 AC106774.5-201ENST00000640558 597 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
NPHP4O75161 AC233724.18-201ENST00000640803 597 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
NPHP4O75161 AC233724.21-201ENST00000640846 597 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
NPHP4O75161 AC079325.2-201ENST00000641710 606 ntAPPRIS P5 BASIC20.93■□□□□ 0.94
NPHP4O75161 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
NPHP4O75161 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
NPHP4O75161 LINC02447-202ENST00000501888 2146 ntBASIC20.93■□□□□ 0.94
NPHP4O75161 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
NPHP4O75161 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
NPHP4O75161 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
NPHP4O75161 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
NPHP4O75161 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
NPHP4O75161 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC20.92■□□□□ 0.94
NPHP4O75161 AC106820.2-201ENST00000563775 3264 ntBASIC20.92■□□□□ 0.94
NPHP4O75161 TMSB15A-201ENST00000289373 685 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
NPHP4O75161 HIST1H2BJ-201ENST00000339812 381 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
NPHP4O75161 CDKN2C-202ENST00000371761 1220 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
NPHP4O75161 CXCL12-205ENST00000395794 1052 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
NPHP4O75161 PRKAR2A-AS1-203ENST00000431705 592 ntTSL 4 BASIC20.92■□□□□ 0.94
NPHP4O75161 APCDD1L-AS1-206ENST00000445984 566 ntTSL 3 BASIC20.92■□□□□ 0.94
NPHP4O75161 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC20.92■□□□□ 0.94
NPHP4O75161 APCDD1L-AS1-208ENST00000448374 546 ntTSL 4 BASIC20.92■□□□□ 0.94
NPHP4O75161 POLR2J3-217ENST00000513438 546 ntTSL 3 BASIC20.92■□□□□ 0.94
NPHP4O75161 AC008050.1-201ENST00000554926 632 ntTSL 3 BASIC20.92■□□□□ 0.94
NPHP4O75161 NAA38-205ENST00000575771 852 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
NPHP4O75161 C17orf62-216ENST00000578919 841 ntAPPRIS P1 TSL 3 BASIC20.92■□□□□ 0.94
NPHP4O75161 RPS5-204ENST00000598098 536 ntTSL 2 BASIC20.92■□□□□ 0.94
NPHP4O75161 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
NPHP4O75161 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
NPHP4O75161 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
NPHP4O75161 FAS-202ENST00000352159 1722 ntTSL 5 BASIC20.92■□□□□ 0.94
NPHP4O75161 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC20.92■□□□□ 0.94
NPHP4O75161 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC20.92■□□□□ 0.94
NPHP4O75161 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC20.92■□□□□ 0.94
NPHP4O75161 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
NPHP4O75161 SERPINB6-206ENST00000380546 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
NPHP4O75161 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC20.91■□□□□ 0.94
NPHP4O75161 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms