Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 HTR3E-AS1-201ENST00000431427 515 ntTSL 4 BASIC21.68■■□□□ 1.06
MSH5O43196 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC21.68■■□□□ 1.06
MSH5O43196 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC21.68■■□□□ 1.06
MSH5O43196 GPR53P-205ENST00000457298 1084 ntBASIC21.68■■□□□ 1.06
MSH5O43196 HESX1-202ENST00000473921 757 ntTSL 5 BASIC21.68■■□□□ 1.06
MSH5O43196 AC117386.2-203ENST00000489690 557 ntTSL 3 BASIC21.68■■□□□ 1.06
MSH5O43196 LINC01017-201ENST00000508823 768 ntTSL 3 BASIC21.68■■□□□ 1.06
MSH5O43196 AC055855.2-201ENST00000565993 500 ntTSL 2 BASIC21.68■■□□□ 1.06
MSH5O43196 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC21.68■■□□□ 1.06
MSH5O43196 AC090371.1-201ENST00000580071 558 ntTSL 4 BASIC21.68■■□□□ 1.06
MSH5O43196 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
MSH5O43196 RBM11P1-201ENST00000604951 799 ntBASIC21.68■■□□□ 1.06
MSH5O43196 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC21.68■■□□□ 1.06
MSH5O43196 AC022021.1-201ENST00000634334 843 ntTSL 5 BASIC21.68■■□□□ 1.06
MSH5O43196 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
MSH5O43196 AL355922.2-201ENST00000557335 1398 ntTSL 2 BASIC21.68■■□□□ 1.06
MSH5O43196 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC21.68■■□□□ 1.06
MSH5O43196 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC21.68■■□□□ 1.06
MSH5O43196 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
MSH5O43196 REXO1L11P-201ENST00000620964 1927 ntBASIC21.68■■□□□ 1.06
MSH5O43196 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC21.68■■□□□ 1.06
MSH5O43196 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
MSH5O43196 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
MSH5O43196 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
MSH5O43196 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
MSH5O43196 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC21.67■■□□□ 1.06
MSH5O43196 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
MSH5O43196 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
MSH5O43196 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
MSH5O43196 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
MSH5O43196 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
MSH5O43196 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
MSH5O43196 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC21.67■■□□□ 1.06
MSH5O43196 LINS1-214ENST00000561308 1612 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
MSH5O43196 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC21.67■■□□□ 1.06
MSH5O43196 LINC00595-212ENST00000634933 1544 ntTSL 5 BASIC21.67■■□□□ 1.06
MSH5O43196 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
MSH5O43196 AC117503.4-201ENST00000623229 1418 ntBASIC21.67■■□□□ 1.06
MSH5O43196 MTND4P16-201ENST00000466108 1367 ntBASIC21.67■■□□□ 1.06
MSH5O43196 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
MSH5O43196 RBMS3-AS2-201ENST00000366321 582 ntTSL 3 BASIC21.67■■□□□ 1.06
MSH5O43196 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
MSH5O43196 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC21.67■■□□□ 1.06
MSH5O43196 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC21.67■■□□□ 1.06
MSH5O43196 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC21.67■■□□□ 1.06
MSH5O43196 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
MSH5O43196 AL353706.1-201ENST00000436728 494 ntBASIC21.67■■□□□ 1.06
MSH5O43196 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
MSH5O43196 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
MSH5O43196 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
MSH5O43196 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC21.67■■□□□ 1.06
MSH5O43196 AGGF1P3-201ENST00000493675 1213 ntBASIC21.67■■□□□ 1.06
MSH5O43196 LINC02499-201ENST00000502291 763 ntTSL 3 BASIC21.67■■□□□ 1.06
MSH5O43196 LINC01099-201ENST00000507011 512 ntTSL 5 BASIC21.67■■□□□ 1.06
MSH5O43196 AC079866.1-201ENST00000534985 1220 ntBASIC21.67■■□□□ 1.06
MSH5O43196 AC007728.1-202ENST00000564510 787 ntTSL 3 BASIC21.67■■□□□ 1.06
MSH5O43196 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC21.67■■□□□ 1.06
MSH5O43196 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC21.67■■□□□ 1.06
MSH5O43196 AL034376.2-201ENST00000568110 573 ntTSL 2 BASIC21.67■■□□□ 1.06
MSH5O43196 IFT20-216ENST00000588477 774 ntTSL 5 BASIC21.67■■□□□ 1.06
MSH5O43196 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
MSH5O43196 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
MSH5O43196 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC21.67■■□□□ 1.06
MSH5O43196 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
MSH5O43196 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
MSH5O43196 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
MSH5O43196 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
MSH5O43196 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
MSH5O43196 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
MSH5O43196 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC21.66■■□□□ 1.06
MSH5O43196 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC21.66■■□□□ 1.06
MSH5O43196 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC21.66■■□□□ 1.06
MSH5O43196 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC21.66■■□□□ 1.06
MSH5O43196 CU639417.3-201ENST00000624240 1404 ntBASIC21.66■■□□□ 1.06
MSH5O43196 CCT6P3-203ENST00000452026 1383 ntBASIC21.66■■□□□ 1.06
MSH5O43196 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
MSH5O43196 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
MSH5O43196 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
MSH5O43196 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC21.66■■□□□ 1.06
MSH5O43196 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC21.66■■□□□ 1.06
MSH5O43196 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
MSH5O43196 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
MSH5O43196 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC21.66■■□□□ 1.06
MSH5O43196 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
MSH5O43196 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC21.66■■□□□ 1.06
MSH5O43196 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC21.66■■□□□ 1.06
MSH5O43196 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC21.66■■□□□ 1.06
MSH5O43196 SLC10A7-208ENST00000511374 869 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
MSH5O43196 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC21.66■■□□□ 1.06
MSH5O43196 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC21.66■■□□□ 1.06
MSH5O43196 RPL27A-210ENST00000531978 867 ntTSL 2 BASIC21.66■■□□□ 1.06
MSH5O43196 OR7E2P-201ENST00000533071 889 ntBASIC21.66■■□□□ 1.06
MSH5O43196 AC025035.1-201ENST00000551571 894 ntTSL 2 BASIC21.66■■□□□ 1.06
MSH5O43196 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC21.66■■□□□ 1.06
MSH5O43196 AL009183.1-201ENST00000603760 355 ntBASIC21.66■■□□□ 1.06
MSH5O43196 ZBTB20-AS5-203ENST00000628886 819 ntTSL 5 BASIC21.66■■□□□ 1.06
MSH5O43196 AL033527.5-202ENST00000641632 1098 ntBASIC21.66■■□□□ 1.06
MSH5O43196 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC21.66■■□□□ 1.06
MSH5O43196 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
MSH5O43196 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 53.6 ms