Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 AC006001.1-201ENST00000325130 474 ntBASIC13.63□□□□□ -0.23
CLCF1Q9UBD9 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC13.63□□□□□ -0.23
CLCF1Q9UBD9 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
CLCF1Q9UBD9 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
CLCF1Q9UBD9 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
CLCF1Q9UBD9 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC13.63□□□□□ -0.23
CLCF1Q9UBD9 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC13.63□□□□□ -0.23
CLCF1Q9UBD9 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC13.63□□□□□ -0.23
CLCF1Q9UBD9 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC13.63□□□□□ -0.23
CLCF1Q9UBD9 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CLCF1Q9UBD9 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC13.63□□□□□ -0.23
CLCF1Q9UBD9 AHRR-211ENST00000515206 462 ntTSL 5 BASIC13.63□□□□□ -0.23
CLCF1Q9UBD9 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC13.63□□□□□ -0.23
CLCF1Q9UBD9 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC13.63□□□□□ -0.23
CLCF1Q9UBD9 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC13.63□□□□□ -0.23
CLCF1Q9UBD9 AC078819.1-201ENST00000547454 765 ntBASIC13.63□□□□□ -0.23
CLCF1Q9UBD9 AC012085.1-201ENST00000548270 765 ntBASIC13.63□□□□□ -0.23
CLCF1Q9UBD9 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC13.63□□□□□ -0.23
CLCF1Q9UBD9 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC13.63□□□□□ -0.23
CLCF1Q9UBD9 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC13.63□□□□□ -0.23
CLCF1Q9UBD9 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC13.63□□□□□ -0.23
CLCF1Q9UBD9 RN7SL48P-201ENST00000579283 293 ntBASIC13.63□□□□□ -0.23
CLCF1Q9UBD9 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CLCF1Q9UBD9 TECR-220ENST00000600083 1204 ntTSL 2 BASIC13.63□□□□□ -0.23
CLCF1Q9UBD9 AC138951.2-201ENST00000623455 1161 ntBASIC13.63□□□□□ -0.23
CLCF1Q9UBD9 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CLCF1Q9UBD9 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC13.63□□□□□ -0.23
CLCF1Q9UBD9 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CLCF1Q9UBD9 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CLCF1Q9UBD9 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
CLCF1Q9UBD9 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
CLCF1Q9UBD9 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC13.63□□□□□ -0.23
CLCF1Q9UBD9 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
CLCF1Q9UBD9 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC13.63□□□□□ -0.23
CLCF1Q9UBD9 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CLCF1Q9UBD9 LRRC59-203ENST00000576448 1531 ntBASIC13.63□□□□□ -0.23
CLCF1Q9UBD9 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CLCF1Q9UBD9 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CLCF1Q9UBD9 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC13.63□□□□□ -0.23
CLCF1Q9UBD9 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC13.63□□□□□ -0.23
CLCF1Q9UBD9 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CLCF1Q9UBD9 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CLCF1Q9UBD9 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CLCF1Q9UBD9 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC13.62□□□□□ -0.23
CLCF1Q9UBD9 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CLCF1Q9UBD9 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC13.62□□□□□ -0.23
CLCF1Q9UBD9 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC13.62□□□□□ -0.23
CLCF1Q9UBD9 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
CLCF1Q9UBD9 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CLCF1Q9UBD9 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC13.62□□□□□ -0.23
CLCF1Q9UBD9 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
CLCF1Q9UBD9 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
CLCF1Q9UBD9 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
CLCF1Q9UBD9 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC13.62□□□□□ -0.23
CLCF1Q9UBD9 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC13.62□□□□□ -0.23
CLCF1Q9UBD9 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CLCF1Q9UBD9 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
CLCF1Q9UBD9 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC13.62□□□□□ -0.23
CLCF1Q9UBD9 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CLCF1Q9UBD9 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CLCF1Q9UBD9 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CLCF1Q9UBD9 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
CLCF1Q9UBD9 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CLCF1Q9UBD9 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CLCF1Q9UBD9 RPF1-202ENST00000370656 724 ntTSL 2 BASIC13.62□□□□□ -0.23
CLCF1Q9UBD9 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
CLCF1Q9UBD9 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
CLCF1Q9UBD9 LSM5-207ENST00000410044 687 ntTSL 3 BASIC13.62□□□□□ -0.23
CLCF1Q9UBD9 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC13.62□□□□□ -0.23
CLCF1Q9UBD9 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC13.62□□□□□ -0.23
CLCF1Q9UBD9 GHSR-202ENST00000427970 912 ntBASIC13.62□□□□□ -0.23
CLCF1Q9UBD9 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC13.62□□□□□ -0.23
CLCF1Q9UBD9 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
CLCF1Q9UBD9 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC13.62□□□□□ -0.23
CLCF1Q9UBD9 YBX1P6-201ENST00000442962 1002 ntBASIC13.62□□□□□ -0.23
CLCF1Q9UBD9 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC13.62□□□□□ -0.23
CLCF1Q9UBD9 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC13.62□□□□□ -0.23
CLCF1Q9UBD9 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC13.62□□□□□ -0.23
CLCF1Q9UBD9 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CLCF1Q9UBD9 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC13.62□□□□□ -0.23
CLCF1Q9UBD9 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
CLCF1Q9UBD9 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
CLCF1Q9UBD9 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
CLCF1Q9UBD9 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CLCF1Q9UBD9 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC13.62□□□□□ -0.23
CLCF1Q9UBD9 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CLCF1Q9UBD9 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
CLCF1Q9UBD9 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CLCF1Q9UBD9 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC13.62□□□□□ -0.23
CLCF1Q9UBD9 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
CLCF1Q9UBD9 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC13.62□□□□□ -0.23
CLCF1Q9UBD9 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CLCF1Q9UBD9 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
CLCF1Q9UBD9 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CLCF1Q9UBD9 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
CLCF1Q9UBD9 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC13.62□□□□□ -0.23
CLCF1Q9UBD9 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
CLCF1Q9UBD9 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CLCF1Q9UBD9 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CLCF1Q9UBD9 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 395.7 ms