Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
VPS13AQ96RL7 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
VPS13AQ96RL7 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC14.79□□□□□ -0.04
VPS13AQ96RL7 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
VPS13AQ96RL7 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC14.79□□□□□ -0.04
VPS13AQ96RL7 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
VPS13AQ96RL7 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
VPS13AQ96RL7 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
VPS13AQ96RL7 TXNDC17-208ENST00000574838 746 ntTSL 3 BASIC14.79□□□□□ -0.04
VPS13AQ96RL7 AC021016.3-201ENST00000608367 477 ntBASIC14.79□□□□□ -0.04
VPS13AQ96RL7 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
VPS13AQ96RL7 REXO1L4P-201ENST00000605109 1937 ntBASIC14.79□□□□□ -0.04
VPS13AQ96RL7 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
VPS13AQ96RL7 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC14.78□□□□□ -0.04
VPS13AQ96RL7 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS13AQ96RL7 AC025183.3-201ENST00000623526 1482 ntBASIC14.78□□□□□ -0.04
VPS13AQ96RL7 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS13AQ96RL7 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS13AQ96RL7 AC124067.4-201ENST00000519691 2379 ntBASIC14.78□□□□□ -0.04
VPS13AQ96RL7 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS13AQ96RL7 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
VPS13AQ96RL7 TRBV5-7-201ENST00000390378 343 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
VPS13AQ96RL7 TSPY25P-201ENST00000429463 745 ntBASIC14.78□□□□□ -0.04
VPS13AQ96RL7 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC14.78□□□□□ -0.04
VPS13AQ96RL7 ANAPC11-206ENST00000571874 636 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
VPS13AQ96RL7 AP001184.1-201ENST00000637936 376 ntBASIC14.78□□□□□ -0.04
VPS13AQ96RL7 ARRB2-218ENST00000575877 1579 ntTSL 5 BASIC14.78□□□□□ -0.04
VPS13AQ96RL7 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC14.78□□□□□ -0.04
VPS13AQ96RL7 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
VPS13AQ96RL7 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS13AQ96RL7 PCDHA14-201ENST00000506751 2298 ntBASIC14.78□□□□□ -0.04
VPS13AQ96RL7 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS13AQ96RL7 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
VPS13AQ96RL7 API5-202ENST00000420461 2009 ntTSL 2 BASIC14.78□□□□□ -0.04
VPS13AQ96RL7 MEIKIN-205ENST00000616644 1438 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
VPS13AQ96RL7 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
VPS13AQ96RL7 C18orf21-202ENST00000333234 958 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
VPS13AQ96RL7 AC093627.2-201ENST00000497017 568 ntTSL 4 BASIC14.78□□□□□ -0.04
VPS13AQ96RL7 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC14.78□□□□□ -0.04
VPS13AQ96RL7 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
VPS13AQ96RL7 MIR2392-201ENST00000584881 84 ntBASIC14.78□□□□□ -0.04
VPS13AQ96RL7 OCEL1-206ENST00000597836 1044 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
VPS13AQ96RL7 AC132872.4-202ENST00000622924 2756 ntBASIC14.78□□□□□ -0.04
VPS13AQ96RL7 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC14.78□□□□□ -0.04
VPS13AQ96RL7 TNRC18P3-201ENST00000441896 2691 ntBASIC14.78□□□□□ -0.04
VPS13AQ96RL7 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS13AQ96RL7 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS13AQ96RL7 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC14.78□□□□□ -0.04
VPS13AQ96RL7 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC14.78□□□□□ -0.04
VPS13AQ96RL7 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
VPS13AQ96RL7 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC14.78□□□□□ -0.04
VPS13AQ96RL7 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS13AQ96RL7 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
VPS13AQ96RL7 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC14.77□□□□□ -0.04
VPS13AQ96RL7 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC14.77□□□□□ -0.04
VPS13AQ96RL7 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC14.77□□□□□ -0.04
VPS13AQ96RL7 GDNF-207ENST00000515058 764 ntTSL 5 BASIC14.77□□□□□ -0.04
VPS13AQ96RL7 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
VPS13AQ96RL7 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC14.77□□□□□ -0.04
VPS13AQ96RL7 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
VPS13AQ96RL7 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.04
VPS13AQ96RL7 ING4-207ENST00000446105 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC14.77□□□□□ -0.04
VPS13AQ96RL7 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
VPS13AQ96RL7 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
VPS13AQ96RL7 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
VPS13AQ96RL7 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
VPS13AQ96RL7 CD74-202ENST00000353334 1449 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
VPS13AQ96RL7 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
VPS13AQ96RL7 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.04
VPS13AQ96RL7 AREG-202ENST00000502307 956 ntTSL 5 BASIC14.77□□□□□ -0.05
VPS13AQ96RL7 AC122719.1-201ENST00000507989 559 ntTSL 4 BASIC14.77□□□□□ -0.05
VPS13AQ96RL7 C11orf1-202ENST00000528125 534 ntTSL 2 BASIC14.77□□□□□ -0.05
VPS13AQ96RL7 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC14.77□□□□□ -0.05
VPS13AQ96RL7 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
VPS13AQ96RL7 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
VPS13AQ96RL7 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
VPS13AQ96RL7 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC14.77□□□□□ -0.05
VPS13AQ96RL7 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
VPS13AQ96RL7 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.05
VPS13AQ96RL7 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC14.77□□□□□ -0.05
VPS13AQ96RL7 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC14.77□□□□□ -0.05
VPS13AQ96RL7 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
VPS13AQ96RL7 STK16-203ENST00000409516 895 ntTSL 2 BASIC14.77□□□□□ -0.05
VPS13AQ96RL7 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC14.77□□□□□ -0.05
VPS13AQ96RL7 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC14.77□□□□□ -0.05
VPS13AQ96RL7 AP000358.1-201ENST00000456260 156 ntBASIC14.77□□□□□ -0.05
VPS13AQ96RL7 ZSCAN2-208ENST00000485222 910 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
VPS13AQ96RL7 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC14.77□□□□□ -0.05
VPS13AQ96RL7 ZSCAN2-210ENST00000538076 1109 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
VPS13AQ96RL7 MAFTRR-203ENST00000567993 685 ntTSL 3 BASIC14.77□□□□□ -0.05
VPS13AQ96RL7 AC009884.2-201ENST00000603110 324 ntBASIC14.77□□□□□ -0.05
VPS13AQ96RL7 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC14.77□□□□□ -0.05
VPS13AQ96RL7 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
VPS13AQ96RL7 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
VPS13AQ96RL7 STAG1-206ENST00000480733 1304 ntTSL 2 BASIC14.77□□□□□ -0.05
VPS13AQ96RL7 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
VPS13AQ96RL7 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC14.76□□□□□ -0.05
VPS13AQ96RL7 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
VPS13AQ96RL7 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
VPS13AQ96RL7 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms