Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
VMP1Q96GC9 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC14.81□□□□□ -0.04
VMP1Q96GC9 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
VMP1Q96GC9 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
VMP1Q96GC9 DENND1B-211ENST00000620048 8378 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
VMP1Q96GC9 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
VMP1Q96GC9 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
VMP1Q96GC9 PCDHA11-201ENST00000398640 6115 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
VMP1Q96GC9 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC14.8□□□□□ -0.04
VMP1Q96GC9 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC14.8□□□□□ -0.04
VMP1Q96GC9 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
VMP1Q96GC9 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
VMP1Q96GC9 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC14.8□□□□□ -0.04
VMP1Q96GC9 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC14.8□□□□□ -0.04
VMP1Q96GC9 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC14.8□□□□□ -0.04
VMP1Q96GC9 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC14.8□□□□□ -0.04
VMP1Q96GC9 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
VMP1Q96GC9 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
VMP1Q96GC9 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC14.8□□□□□ -0.04
VMP1Q96GC9 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC14.8□□□□□ -0.04
VMP1Q96GC9 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC14.8□□□□□ -0.04
VMP1Q96GC9 MIR661-201ENST00000384842 89 ntBASIC14.8□□□□□ -0.04
VMP1Q96GC9 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC14.8□□□□□ -0.04
VMP1Q96GC9 POLD4-211ENST00000539074 714 ntTSL 3 BASIC14.8□□□□□ -0.04
VMP1Q96GC9 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC14.8□□□□□ -0.04
VMP1Q96GC9 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC14.8□□□□□ -0.04
VMP1Q96GC9 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC14.8□□□□□ -0.04
VMP1Q96GC9 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC14.8□□□□□ -0.04
VMP1Q96GC9 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
VMP1Q96GC9 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
VMP1Q96GC9 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC14.8□□□□□ -0.04
VMP1Q96GC9 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC14.8□□□□□ -0.04
VMP1Q96GC9 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
VMP1Q96GC9 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
VMP1Q96GC9 AC004233.3-201ENST00000607794 1269 ntBASIC14.8□□□□□ -0.04
VMP1Q96GC9 RNA5-8SN1-201ENST00000610460 153 ntBASIC14.8□□□□□ -0.04
VMP1Q96GC9 RNA5-8SN5-202ENST00000612463 153 ntBASIC14.8□□□□□ -0.04
VMP1Q96GC9 RNA5-8SN4-201ENST00000613359 153 ntBASIC14.8□□□□□ -0.04
VMP1Q96GC9 RNA5-8SN5-201ENST00000619471 153 ntBASIC14.8□□□□□ -0.04
VMP1Q96GC9 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC14.8□□□□□ -0.04
VMP1Q96GC9 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC14.8□□□□□ -0.04
VMP1Q96GC9 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
VMP1Q96GC9 TDG-209ENST00000544861 1387 ntTSL 2 BASIC14.8□□□□□ -0.04
VMP1Q96GC9 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
VMP1Q96GC9 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
VMP1Q96GC9 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
VMP1Q96GC9 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
VMP1Q96GC9 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
VMP1Q96GC9 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
VMP1Q96GC9 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC14.8□□□□□ -0.04
VMP1Q96GC9 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC14.8□□□□□ -0.04
VMP1Q96GC9 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
VMP1Q96GC9 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
VMP1Q96GC9 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
VMP1Q96GC9 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
VMP1Q96GC9 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
VMP1Q96GC9 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC14.8□□□□□ -0.04
VMP1Q96GC9 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
VMP1Q96GC9 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
VMP1Q96GC9 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
VMP1Q96GC9 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
VMP1Q96GC9 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC14.8□□□□□ -0.04
VMP1Q96GC9 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
VMP1Q96GC9 AC005912.2-201ENST00000619492 2400 ntBASIC14.8□□□□□ -0.04
VMP1Q96GC9 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
VMP1Q96GC9 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC14.79□□□□□ -0.04
VMP1Q96GC9 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
VMP1Q96GC9 BRSK1-206ENST00000590333 2977 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
VMP1Q96GC9 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
VMP1Q96GC9 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
VMP1Q96GC9 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
VMP1Q96GC9 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC14.79□□□□□ -0.04
VMP1Q96GC9 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
VMP1Q96GC9 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
VMP1Q96GC9 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
VMP1Q96GC9 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
VMP1Q96GC9 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
VMP1Q96GC9 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
VMP1Q96GC9 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC14.79□□□□□ -0.04
VMP1Q96GC9 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC14.79□□□□□ -0.04
VMP1Q96GC9 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC14.79□□□□□ -0.04
VMP1Q96GC9 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC14.79□□□□□ -0.04
VMP1Q96GC9 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC14.79□□□□□ -0.04
VMP1Q96GC9 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
VMP1Q96GC9 RGMA-203ENST00000542321 3038 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
VMP1Q96GC9 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
VMP1Q96GC9 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC14.79□□□□□ -0.04
VMP1Q96GC9 AC138761.1-201ENST00000584393 385 ntBASIC14.79□□□□□ -0.04
VMP1Q96GC9 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
VMP1Q96GC9 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC14.79□□□□□ -0.04
VMP1Q96GC9 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC14.79□□□□□ -0.04
VMP1Q96GC9 LINC00552-201ENST00000625151 2579 ntBASIC14.79□□□□□ -0.04
VMP1Q96GC9 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
VMP1Q96GC9 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
VMP1Q96GC9 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
VMP1Q96GC9 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC14.79□□□□□ -0.04
VMP1Q96GC9 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
VMP1Q96GC9 SBF1P1-201ENST00000444527 5631 ntBASIC14.79□□□□□ -0.04
VMP1Q96GC9 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
VMP1Q96GC9 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 78.6 ms