Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 ARHGAP33-203ENST00000314737 3858 ntAPPRIS P3 TSL 2 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 GOSR2-233ENST00000640068 3103 ntTSL 5 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 DNAJC11-202ENST00000377577 3311 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 PRPF40B-209ENST00000548825 3307 ntAPPRIS P2 TSL 5 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 HMGA2-204ENST00000403681 4473 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 AL365181.3-201ENST00000605886 3222 ntBASIC4.79□□□□□ -1.64
SYNE1Q8NF91 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 EPRS-201ENST00000366923 5014 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 AC234783.1-201ENST00000441761 496 ntBASIC4.79□□□□□ -1.64
SYNE1Q8NF91 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 DIAPH2-203ENST00000373049 3730 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 AL596257.1-201ENST00000641463 2694 ntBASIC4.79□□□□□ -1.64
SYNE1Q8NF91 CACNA2D2-206ENST00000479441 3453 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 DNM1-213ENST00000628346 3835 ntAPPRIS ALT1 TSL 5 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 ZNF384-201ENST00000319770 3266 ntTSL 2 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 USP19-208ENST00000453664 4719 ntAPPRIS ALT2 TSL 2 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 FAM198B-201ENST00000296530 4985 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 SGMS1-203ENST00000429490 3634 ntTSL 5 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 TOP3B-202ENST00000398793 3107 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 AC099336.1-201ENST00000417053 1171 ntBASIC4.79□□□□□ -1.64
SYNE1Q8NF91 RNA5SP412-201ENST00000516234 123 ntBASIC4.79□□□□□ -1.64
SYNE1Q8NF91 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 TYK2-205ENST00000525621 4347 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 MAP7D3-201ENST00000316077 4567 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 AC023824.1-201ENST00000562945 2975 ntBASIC4.79□□□□□ -1.64
SYNE1Q8NF91 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 GRAMD1B-216ENST00000638157 3849 ntTSL 5 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 MMP14-201ENST00000311852 3732 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 RGMA-204ENST00000543599 3174 ntAPPRIS ALT2 TSL 5 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 DNAJA4-203ENST00000394855 3245 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 AHI1-201ENST00000265602 4335 ntAPPRIS P2 TSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 TMPRSS6-203ENST00000406725 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 62 ms