Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC13.47□□□□□ -0.25
CCDC54Q8NEL0 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC13.47□□□□□ -0.25
CCDC54Q8NEL0 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC13.47□□□□□ -0.25
CCDC54Q8NEL0 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC13.47□□□□□ -0.25
CCDC54Q8NEL0 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC13.47□□□□□ -0.25
CCDC54Q8NEL0 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC54Q8NEL0 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC13.47□□□□□ -0.25
CCDC54Q8NEL0 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC13.47□□□□□ -0.25
CCDC54Q8NEL0 MIR6080-201ENST00000617359 66 ntBASIC13.47□□□□□ -0.25
CCDC54Q8NEL0 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC13.47□□□□□ -0.25
CCDC54Q8NEL0 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC54Q8NEL0 AL033527.5-202ENST00000641632 1098 ntBASIC13.47□□□□□ -0.25
CCDC54Q8NEL0 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC54Q8NEL0 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
CCDC54Q8NEL0 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC54Q8NEL0 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC13.47□□□□□ -0.25
CCDC54Q8NEL0 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC54Q8NEL0 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
CCDC54Q8NEL0 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC13.47□□□□□ -0.25
CCDC54Q8NEL0 AC012508.2-201ENST00000567613 1472 ntBASIC13.47□□□□□ -0.25
CCDC54Q8NEL0 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC54Q8NEL0 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC13.47□□□□□ -0.25
CCDC54Q8NEL0 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
CCDC54Q8NEL0 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC54Q8NEL0 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC13.47□□□□□ -0.25
CCDC54Q8NEL0 AC087386.2-201ENST00000623212 4637 ntBASIC13.47□□□□□ -0.25
CCDC54Q8NEL0 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC13.47□□□□□ -0.25
CCDC54Q8NEL0 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC54Q8NEL0 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC54Q8NEL0 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC13.47□□□□□ -0.25
CCDC54Q8NEL0 CX3CL1-204ENST00000565912 5796 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC54Q8NEL0 PTPN23-201ENST00000265562 5244 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC54Q8NEL0 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
CCDC54Q8NEL0 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC13.46□□□□□ -0.25
CCDC54Q8NEL0 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC13.46□□□□□ -0.25
CCDC54Q8NEL0 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CCDC54Q8NEL0 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
CCDC54Q8NEL0 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC13.46□□□□□ -0.25
CCDC54Q8NEL0 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC13.46□□□□□ -0.25
CCDC54Q8NEL0 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CCDC54Q8NEL0 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CCDC54Q8NEL0 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
CCDC54Q8NEL0 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC13.46□□□□□ -0.25
CCDC54Q8NEL0 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
CCDC54Q8NEL0 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CCDC54Q8NEL0 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.25
CCDC54Q8NEL0 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC13.46□□□□□ -0.25
CCDC54Q8NEL0 ALX4-201ENST00000329255 5750 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CCDC54Q8NEL0 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
CCDC54Q8NEL0 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
CCDC54Q8NEL0 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC13.46□□□□□ -0.25
CCDC54Q8NEL0 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC13.46□□□□□ -0.25
CCDC54Q8NEL0 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC13.46□□□□□ -0.25
CCDC54Q8NEL0 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC13.46□□□□□ -0.25
CCDC54Q8NEL0 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC13.46□□□□□ -0.25
CCDC54Q8NEL0 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
CCDC54Q8NEL0 AC104457.1-201ENST00000401024 814 ntBASIC13.46□□□□□ -0.25
CCDC54Q8NEL0 AC015922.1-201ENST00000421102 1152 ntBASIC13.46□□□□□ -0.25
CCDC54Q8NEL0 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC13.46□□□□□ -0.25
CCDC54Q8NEL0 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CCDC54Q8NEL0 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC13.46□□□□□ -0.25
CCDC54Q8NEL0 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC13.46□□□□□ -0.25
CCDC54Q8NEL0 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC13.46□□□□□ -0.25
CCDC54Q8NEL0 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.25
CCDC54Q8NEL0 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC13.46□□□□□ -0.25
CCDC54Q8NEL0 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC13.46□□□□□ -0.25
CCDC54Q8NEL0 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC13.46□□□□□ -0.25
CCDC54Q8NEL0 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC13.46□□□□□ -0.25
CCDC54Q8NEL0 SERF2-217ENST00000630046 862 ntTSL 5 BASIC13.46□□□□□ -0.25
CCDC54Q8NEL0 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.25
CCDC54Q8NEL0 PRKCB-201ENST00000303531 7969 ntAPPRIS P4 TSL 1 (best) BASIC13.46□□□□□ -0.25
CCDC54Q8NEL0 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CCDC54Q8NEL0 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CCDC54Q8NEL0 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
CCDC54Q8NEL0 IKZF1-204ENST00000349824 5757 ntTSL 5 BASIC13.46□□□□□ -0.25
CCDC54Q8NEL0 AC079781.5-202ENST00000641784 3743 ntBASIC13.46□□□□□ -0.25
CCDC54Q8NEL0 CA12-201ENST00000178638 6413 ntAPPRIS P4 TSL 1 (best) BASIC13.46□□□□□ -0.25
CCDC54Q8NEL0 ADAMTS7P1-201ENST00000613213 4793 ntBASIC13.46□□□□□ -0.26
CCDC54Q8NEL0 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.26
CCDC54Q8NEL0 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
CCDC54Q8NEL0 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
CCDC54Q8NEL0 DEK-201ENST00000244776 1441 ntTSL 2 BASIC13.46□□□□□ -0.26
CCDC54Q8NEL0 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
CCDC54Q8NEL0 NCOR2-202ENST00000404121 7175 ntTSL 5 BASIC13.46□□□□□ -0.26
CCDC54Q8NEL0 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
CCDC54Q8NEL0 AL390755.1-201ENST00000623716 2027 ntBASIC13.46□□□□□ -0.26
CCDC54Q8NEL0 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
CCDC54Q8NEL0 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
CCDC54Q8NEL0 GOLGA6L17P-202ENST00000614358 1398 ntBASIC13.45□□□□□ -0.26
CCDC54Q8NEL0 SLC35D1-201ENST00000235345 6162 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC54Q8NEL0 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC54Q8NEL0 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC54Q8NEL0 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC13.45□□□□□ -0.26
CCDC54Q8NEL0 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
CCDC54Q8NEL0 FASN-201ENST00000306749 8565 ntAPPRIS P2 TSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC54Q8NEL0 USP3-204ENST00000540797 5474 ntTSL 2 BASIC13.45□□□□□ -0.26
CCDC54Q8NEL0 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC54Q8NEL0 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC13.45□□□□□ -0.26
CCDC54Q8NEL0 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC54Q8NEL0 R3HDM2P2-201ENST00000401880 2116 ntBASIC13.45□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms