Protein–RNA interactions for Protein: Q8N3P4

VPS8, Vacuolar protein sorting-associated protein 8 homolog, humanhuman

Predictions only

Length 1,428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS8Q8N3P4 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
VPS8Q8N3P4 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC23.61■■□□□ 1.37
VPS8Q8N3P4 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
VPS8Q8N3P4 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC23.61■■□□□ 1.37
VPS8Q8N3P4 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC23.6■■□□□ 1.37
VPS8Q8N3P4 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.37
VPS8Q8N3P4 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC23.6■■□□□ 1.37
VPS8Q8N3P4 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
VPS8Q8N3P4 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
VPS8Q8N3P4 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC23.6■■□□□ 1.37
VPS8Q8N3P4 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC23.6■■□□□ 1.37
VPS8Q8N3P4 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
VPS8Q8N3P4 CDC23-208ENST00000505120 455 ntTSL 3 BASIC23.6■■□□□ 1.37
VPS8Q8N3P4 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC23.6■■□□□ 1.37
VPS8Q8N3P4 PACS1-203ENST00000524815 628 ntTSL 4 BASIC23.6■■□□□ 1.37
VPS8Q8N3P4 MIR4525-201ENST00000580000 75 ntBASIC23.6■■□□□ 1.37
VPS8Q8N3P4 MIR4538-201ENST00000581377 78 ntBASIC23.6■■□□□ 1.37
VPS8Q8N3P4 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC23.6■■□□□ 1.37
VPS8Q8N3P4 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC23.6■■□□□ 1.37
VPS8Q8N3P4 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
VPS8Q8N3P4 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC23.6■■□□□ 1.37
VPS8Q8N3P4 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.37
VPS8Q8N3P4 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC23.6■■□□□ 1.37
VPS8Q8N3P4 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC23.6■■□□□ 1.37
VPS8Q8N3P4 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
VPS8Q8N3P4 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC23.6■■□□□ 1.37
VPS8Q8N3P4 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC23.6■■□□□ 1.37
VPS8Q8N3P4 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
VPS8Q8N3P4 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC23.6■■□□□ 1.37
VPS8Q8N3P4 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
VPS8Q8N3P4 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
VPS8Q8N3P4 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
VPS8Q8N3P4 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC23.59■■□□□ 1.37
VPS8Q8N3P4 HYMAI-201ENST00000635591 3347 ntBASIC23.59■■□□□ 1.37
VPS8Q8N3P4 LINC01101-201ENST00000622953 1884 ntBASIC23.59■■□□□ 1.37
VPS8Q8N3P4 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
VPS8Q8N3P4 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC23.59■■□□□ 1.37
VPS8Q8N3P4 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC23.59■■□□□ 1.37
VPS8Q8N3P4 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC23.59■■□□□ 1.37
VPS8Q8N3P4 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC23.59■■□□□ 1.37
VPS8Q8N3P4 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC23.59■■□□□ 1.37
VPS8Q8N3P4 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC23.59■■□□□ 1.37
VPS8Q8N3P4 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC23.59■■□□□ 1.37
VPS8Q8N3P4 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC23.59■■□□□ 1.37
VPS8Q8N3P4 AC009955.4-201ENST00000597192 544 ntBASIC23.59■■□□□ 1.37
VPS8Q8N3P4 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC23.59■■□□□ 1.37
VPS8Q8N3P4 MIR6869-201ENST00000619434 62 ntBASIC23.59■■□□□ 1.37
VPS8Q8N3P4 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC23.59■■□□□ 1.37
VPS8Q8N3P4 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC23.59■■□□□ 1.37
VPS8Q8N3P4 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
VPS8Q8N3P4 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC23.59■■□□□ 1.37
VPS8Q8N3P4 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
VPS8Q8N3P4 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC23.59■■□□□ 1.37
VPS8Q8N3P4 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
VPS8Q8N3P4 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
VPS8Q8N3P4 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC23.59■■□□□ 1.37
VPS8Q8N3P4 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
VPS8Q8N3P4 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
VPS8Q8N3P4 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC23.59■■□□□ 1.37
VPS8Q8N3P4 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
VPS8Q8N3P4 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC23.59■■□□□ 1.37
VPS8Q8N3P4 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC23.59■■□□□ 1.37
VPS8Q8N3P4 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
VPS8Q8N3P4 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC23.59■■□□□ 1.37
VPS8Q8N3P4 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC23.59■■□□□ 1.37
VPS8Q8N3P4 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC23.59■■□□□ 1.37
VPS8Q8N3P4 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC23.59■■□□□ 1.37
VPS8Q8N3P4 VPS18-202ENST00000558474 873 ntTSL 3 BASIC23.59■■□□□ 1.37
VPS8Q8N3P4 AC005730.2-201ENST00000564549 1184 ntBASIC23.59■■□□□ 1.37
VPS8Q8N3P4 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC23.59■■□□□ 1.37
VPS8Q8N3P4 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
VPS8Q8N3P4 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
VPS8Q8N3P4 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC23.58■■□□□ 1.37
VPS8Q8N3P4 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC23.58■■□□□ 1.37
VPS8Q8N3P4 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC23.58■■□□□ 1.37
VPS8Q8N3P4 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
VPS8Q8N3P4 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC23.58■■□□□ 1.37
VPS8Q8N3P4 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC23.58■■□□□ 1.37
VPS8Q8N3P4 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
VPS8Q8N3P4 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC23.58■■□□□ 1.37
VPS8Q8N3P4 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC23.58■■□□□ 1.37
VPS8Q8N3P4 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC23.58■■□□□ 1.37
VPS8Q8N3P4 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC23.58■■□□□ 1.37
VPS8Q8N3P4 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC23.58■■□□□ 1.37
VPS8Q8N3P4 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC23.58■■□□□ 1.37
VPS8Q8N3P4 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
VPS8Q8N3P4 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC23.58■■□□□ 1.37
VPS8Q8N3P4 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC23.58■■□□□ 1.37
VPS8Q8N3P4 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
VPS8Q8N3P4 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
VPS8Q8N3P4 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC23.58■■□□□ 1.36
VPS8Q8N3P4 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC23.58■■□□□ 1.36
VPS8Q8N3P4 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC23.58■■□□□ 1.36
VPS8Q8N3P4 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
VPS8Q8N3P4 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC23.58■■□□□ 1.36
VPS8Q8N3P4 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC23.58■■□□□ 1.36
VPS8Q8N3P4 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC23.58■■□□□ 1.36
VPS8Q8N3P4 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC23.58■■□□□ 1.36
VPS8Q8N3P4 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC23.58■■□□□ 1.36
VPS8Q8N3P4 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC23.58■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 58.6 ms