Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
NPAS3Q8IXF0 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
NPAS3Q8IXF0 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
NPAS3Q8IXF0 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
NPAS3Q8IXF0 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC15.78■□□□□ 0.12
NPAS3Q8IXF0 KRT8P19-201ENST00000551916 1455 ntBASIC15.78■□□□□ 0.12
NPAS3Q8IXF0 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
NPAS3Q8IXF0 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC15.78■□□□□ 0.12
NPAS3Q8IXF0 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC15.78■□□□□ 0.12
NPAS3Q8IXF0 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
NPAS3Q8IXF0 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
NPAS3Q8IXF0 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
NPAS3Q8IXF0 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
NPAS3Q8IXF0 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
NPAS3Q8IXF0 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
NPAS3Q8IXF0 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC15.78■□□□□ 0.12
NPAS3Q8IXF0 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
NPAS3Q8IXF0 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
NPAS3Q8IXF0 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
NPAS3Q8IXF0 CLUHP2-201ENST00000426660 1303 ntBASIC15.78■□□□□ 0.12
NPAS3Q8IXF0 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
NPAS3Q8IXF0 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC15.78■□□□□ 0.12
NPAS3Q8IXF0 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC15.78■□□□□ 0.12
NPAS3Q8IXF0 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
NPAS3Q8IXF0 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
NPAS3Q8IXF0 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
NPAS3Q8IXF0 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC15.78■□□□□ 0.12
NPAS3Q8IXF0 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC15.78■□□□□ 0.12
NPAS3Q8IXF0 MIR769-201ENST00000390225 118 ntBASIC15.78■□□□□ 0.12
NPAS3Q8IXF0 AL136309.1-201ENST00000403917 691 ntBASIC15.78■□□□□ 0.12
NPAS3Q8IXF0 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
NPAS3Q8IXF0 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
NPAS3Q8IXF0 HLA-K-203ENST00000430151 1046 ntBASIC15.78■□□□□ 0.12
NPAS3Q8IXF0 RN7SL769P-201ENST00000469386 295 ntBASIC15.78■□□□□ 0.12
NPAS3Q8IXF0 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC15.78■□□□□ 0.12
NPAS3Q8IXF0 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC15.78■□□□□ 0.12
NPAS3Q8IXF0 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC15.78■□□□□ 0.12
NPAS3Q8IXF0 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC15.78■□□□□ 0.12
NPAS3Q8IXF0 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
NPAS3Q8IXF0 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC15.78■□□□□ 0.12
NPAS3Q8IXF0 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC15.78■□□□□ 0.12
NPAS3Q8IXF0 AC004466.1-201ENST00000599515 1080 ntBASIC15.78■□□□□ 0.12
NPAS3Q8IXF0 HCG18-245ENST00000602550 559 ntTSL 4 BASIC15.78■□□□□ 0.12
NPAS3Q8IXF0 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC15.78■□□□□ 0.12
NPAS3Q8IXF0 AP001505.2-201ENST00000616815 443 ntBASIC15.78■□□□□ 0.12
NPAS3Q8IXF0 AP001002.2-201ENST00000625137 386 ntBASIC15.78■□□□□ 0.12
NPAS3Q8IXF0 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC15.78■□□□□ 0.12
NPAS3Q8IXF0 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
NPAS3Q8IXF0 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
NPAS3Q8IXF0 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
NPAS3Q8IXF0 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC15.78■□□□□ 0.12
NPAS3Q8IXF0 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC15.78■□□□□ 0.12
NPAS3Q8IXF0 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
NPAS3Q8IXF0 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC15.78■□□□□ 0.12
NPAS3Q8IXF0 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
NPAS3Q8IXF0 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
NPAS3Q8IXF0 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
NPAS3Q8IXF0 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC15.78■□□□□ 0.12
NPAS3Q8IXF0 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC15.78■□□□□ 0.12
NPAS3Q8IXF0 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
NPAS3Q8IXF0 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
NPAS3Q8IXF0 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
NPAS3Q8IXF0 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
NPAS3Q8IXF0 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
NPAS3Q8IXF0 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
NPAS3Q8IXF0 BLK-205ENST00000529894 2017 ntTSL 5 BASIC15.77■□□□□ 0.12
NPAS3Q8IXF0 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
NPAS3Q8IXF0 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
NPAS3Q8IXF0 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
NPAS3Q8IXF0 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC15.77■□□□□ 0.12
NPAS3Q8IXF0 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
NPAS3Q8IXF0 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC15.77■□□□□ 0.12
NPAS3Q8IXF0 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
NPAS3Q8IXF0 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
NPAS3Q8IXF0 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
NPAS3Q8IXF0 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC15.77■□□□□ 0.12
NPAS3Q8IXF0 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
NPAS3Q8IXF0 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
NPAS3Q8IXF0 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC15.77■□□□□ 0.12
NPAS3Q8IXF0 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC15.77■□□□□ 0.12
NPAS3Q8IXF0 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
NPAS3Q8IXF0 IMP3P2-201ENST00000489760 475 ntBASIC15.77■□□□□ 0.12
NPAS3Q8IXF0 FTLP10-202ENST00000505798 471 ntBASIC15.77■□□□□ 0.12
NPAS3Q8IXF0 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC15.77■□□□□ 0.12
NPAS3Q8IXF0 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC15.77■□□□□ 0.12
NPAS3Q8IXF0 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC15.77■□□□□ 0.12
NPAS3Q8IXF0 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
NPAS3Q8IXF0 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
NPAS3Q8IXF0 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC15.77■□□□□ 0.12
NPAS3Q8IXF0 AC097724.1-201ENST00000609581 426 ntBASIC15.77■□□□□ 0.12
NPAS3Q8IXF0 ACE-203ENST00000413513 2237 ntTSL 2 BASIC15.77■□□□□ 0.12
NPAS3Q8IXF0 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
NPAS3Q8IXF0 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
NPAS3Q8IXF0 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.11
NPAS3Q8IXF0 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC15.77■□□□□ 0.11
NPAS3Q8IXF0 AL603832.2-201ENST00000566195 2125 ntBASIC15.77■□□□□ 0.11
NPAS3Q8IXF0 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC15.77■□□□□ 0.11
NPAS3Q8IXF0 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.11
NPAS3Q8IXF0 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
NPAS3Q8IXF0 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 96.4 ms