Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC20.45■□□□□ 0.86
NPHP3Q7Z494 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
NPHP3Q7Z494 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
NPHP3Q7Z494 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
NPHP3Q7Z494 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
NPHP3Q7Z494 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
NPHP3Q7Z494 FHL2-206ENST00000408995 1367 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
NPHP3Q7Z494 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC20.45■□□□□ 0.86
NPHP3Q7Z494 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
NPHP3Q7Z494 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
NPHP3Q7Z494 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC20.45■□□□□ 0.86
NPHP3Q7Z494 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
NPHP3Q7Z494 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
NPHP3Q7Z494 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
NPHP3Q7Z494 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC20.45■□□□□ 0.86
NPHP3Q7Z494 MPC1L-201ENST00000423387 571 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
NPHP3Q7Z494 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
NPHP3Q7Z494 NUBP1-202ENST00000433392 1185 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
NPHP3Q7Z494 CHCHD2P9-201ENST00000461726 456 ntBASIC20.45■□□□□ 0.86
NPHP3Q7Z494 AC108199.1-201ENST00000504249 508 ntTSL 3 BASIC20.45■□□□□ 0.86
NPHP3Q7Z494 APOC1P1-201ENST00000507983 630 ntTSL 4 BASIC20.45■□□□□ 0.86
NPHP3Q7Z494 VDAC3-211ENST00000522572 799 ntTSL 5 BASIC20.45■□□□□ 0.86
NPHP3Q7Z494 AC008687.1-201ENST00000591656 786 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
NPHP3Q7Z494 LINC01783-202ENST00000614408 828 ntBASIC20.45■□□□□ 0.86
NPHP3Q7Z494 BX284668.2-205ENST00000619677 828 ntBASIC20.45■□□□□ 0.86
NPHP3Q7Z494 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
NPHP3Q7Z494 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
NPHP3Q7Z494 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
NPHP3Q7Z494 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
NPHP3Q7Z494 FAM69C-202ENST00000400291 1329 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
NPHP3Q7Z494 AL138725.1-201ENST00000407347 1314 ntBASIC20.45■□□□□ 0.86
NPHP3Q7Z494 NTF3-202ENST00000423158 1336 ntAPPRIS ALT1 TSL 1 (best) BASIC20.45■□□□□ 0.86
NPHP3Q7Z494 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
NPHP3Q7Z494 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
NPHP3Q7Z494 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC20.44■□□□□ 0.86
NPHP3Q7Z494 MIR22HG-201ENST00000334146 1383 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
NPHP3Q7Z494 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
NPHP3Q7Z494 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC20.44■□□□□ 0.86
NPHP3Q7Z494 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
NPHP3Q7Z494 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
NPHP3Q7Z494 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
NPHP3Q7Z494 AC084018.2-201ENST00000613093 2607 ntBASIC20.44■□□□□ 0.86
NPHP3Q7Z494 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
NPHP3Q7Z494 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC20.44■□□□□ 0.86
NPHP3Q7Z494 AP000358.1-201ENST00000456260 156 ntBASIC20.44■□□□□ 0.86
NPHP3Q7Z494 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
NPHP3Q7Z494 LINC02447-202ENST00000501888 2146 ntBASIC20.44■□□□□ 0.86
NPHP3Q7Z494 ORAOV1-209ENST00000538554 1000 ntTSL 2 BASIC20.44■□□□□ 0.86
NPHP3Q7Z494 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC20.44■□□□□ 0.86
NPHP3Q7Z494 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
NPHP3Q7Z494 PRSS45-202ENST00000620911 1041 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
NPHP3Q7Z494 AL161773.1-201ENST00000624845 863 ntBASIC20.44■□□□□ 0.86
NPHP3Q7Z494 AL132780.4-201ENST00000624870 1135 ntBASIC20.44■□□□□ 0.86
NPHP3Q7Z494 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC20.44■□□□□ 0.86
NPHP3Q7Z494 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
NPHP3Q7Z494 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
NPHP3Q7Z494 SLC25A19-205ENST00000442286 1496 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
NPHP3Q7Z494 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC20.44■□□□□ 0.86
NPHP3Q7Z494 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
NPHP3Q7Z494 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
NPHP3Q7Z494 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC20.43■□□□□ 0.86
NPHP3Q7Z494 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC20.43■□□□□ 0.86
NPHP3Q7Z494 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
NPHP3Q7Z494 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
NPHP3Q7Z494 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
NPHP3Q7Z494 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
NPHP3Q7Z494 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
NPHP3Q7Z494 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
NPHP3Q7Z494 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
NPHP3Q7Z494 MIR557-201ENST00000385239 98 ntBASIC20.43■□□□□ 0.86
NPHP3Q7Z494 ZFAND2B-205ENST00000409319 771 ntTSL 2 BASIC20.43■□□□□ 0.86
NPHP3Q7Z494 SERF2-209ENST00000409646 559 ntTSL 4 BASIC20.43■□□□□ 0.86
NPHP3Q7Z494 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC20.43■□□□□ 0.86
NPHP3Q7Z494 SKA2-202ENST00000437036 625 ntTSL 2 BASIC20.43■□□□□ 0.86
NPHP3Q7Z494 AC068397.2-201ENST00000558742 341 ntTSL 5 BASIC20.43■□□□□ 0.86
NPHP3Q7Z494 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC20.43■□□□□ 0.86
NPHP3Q7Z494 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC20.43■□□□□ 0.86
NPHP3Q7Z494 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
NPHP3Q7Z494 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
NPHP3Q7Z494 TNRC18P3-201ENST00000441896 2691 ntBASIC20.43■□□□□ 0.86
NPHP3Q7Z494 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
NPHP3Q7Z494 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC20.43■□□□□ 0.86
NPHP3Q7Z494 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
NPHP3Q7Z494 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
NPHP3Q7Z494 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC20.43■□□□□ 0.86
NPHP3Q7Z494 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
NPHP3Q7Z494 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
NPHP3Q7Z494 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC20.43■□□□□ 0.86
NPHP3Q7Z494 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
NPHP3Q7Z494 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
NPHP3Q7Z494 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC20.42■□□□□ 0.86
NPHP3Q7Z494 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
NPHP3Q7Z494 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
NPHP3Q7Z494 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
NPHP3Q7Z494 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
NPHP3Q7Z494 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC20.42■□□□□ 0.86
NPHP3Q7Z494 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
NPHP3Q7Z494 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC20.42■□□□□ 0.86
NPHP3Q7Z494 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC20.42■□□□□ 0.86
NPHP3Q7Z494 SYCN-201ENST00000318438 573 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 57.9 ms