Protein–RNA interactions for Protein: Q7Z3Y7

KRT28, Keratin, type I cytoskeletal 28, humanhuman

Predictions only

Length 464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT28Q7Z3Y7 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
KRT28Q7Z3Y7 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
KRT28Q7Z3Y7 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
KRT28Q7Z3Y7 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
KRT28Q7Z3Y7 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
KRT28Q7Z3Y7 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
KRT28Q7Z3Y7 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC20.39■□□□□ 0.85
KRT28Q7Z3Y7 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC20.39■□□□□ 0.85
KRT28Q7Z3Y7 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
KRT28Q7Z3Y7 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
KRT28Q7Z3Y7 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
KRT28Q7Z3Y7 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
KRT28Q7Z3Y7 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
KRT28Q7Z3Y7 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
KRT28Q7Z3Y7 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC20.38■□□□□ 0.85
KRT28Q7Z3Y7 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC20.38■□□□□ 0.85
KRT28Q7Z3Y7 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
KRT28Q7Z3Y7 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
KRT28Q7Z3Y7 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
KRT28Q7Z3Y7 AL592076.1-201ENST00000424448 303 ntBASIC20.38■□□□□ 0.85
KRT28Q7Z3Y7 PIN4P1-201ENST00000451079 396 ntBASIC20.38■□□□□ 0.85
KRT28Q7Z3Y7 TPM1-223ENST00000560445 485 ntTSL 3 BASIC20.38■□□□□ 0.85
KRT28Q7Z3Y7 AC005632.3-201ENST00000605544 308 ntBASIC20.38■□□□□ 0.85
KRT28Q7Z3Y7 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC20.38■□□□□ 0.85
KRT28Q7Z3Y7 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
KRT28Q7Z3Y7 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC20.38■□□□□ 0.85
KRT28Q7Z3Y7 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC20.38■□□□□ 0.85
KRT28Q7Z3Y7 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
KRT28Q7Z3Y7 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
KRT28Q7Z3Y7 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
KRT28Q7Z3Y7 MAP2K6-205ENST00000589647 1512 ntTSL 5 BASIC20.37■□□□□ 0.85
KRT28Q7Z3Y7 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
KRT28Q7Z3Y7 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
KRT28Q7Z3Y7 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
KRT28Q7Z3Y7 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC20.37■□□□□ 0.85
KRT28Q7Z3Y7 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
KRT28Q7Z3Y7 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
KRT28Q7Z3Y7 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC20.37■□□□□ 0.85
KRT28Q7Z3Y7 STK26-204ENST00000481105 1835 ntTSL 2 BASIC20.37■□□□□ 0.85
KRT28Q7Z3Y7 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
KRT28Q7Z3Y7 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
KRT28Q7Z3Y7 FRMPD2B-201ENST00000431305 1347 ntBASIC20.37■□□□□ 0.85
KRT28Q7Z3Y7 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC20.37■□□□□ 0.85
KRT28Q7Z3Y7 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC20.37■□□□□ 0.85
KRT28Q7Z3Y7 SPACA3-201ENST00000269053 817 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
KRT28Q7Z3Y7 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
KRT28Q7Z3Y7 LAIR2-201ENST00000301202 699 ntAPPRIS P4 TSL 1 (best) BASIC20.37■□□□□ 0.85
KRT28Q7Z3Y7 PPIE-202ENST00000356511 1079 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
KRT28Q7Z3Y7 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
KRT28Q7Z3Y7 IGLJ3-201ENST00000390324 176 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
KRT28Q7Z3Y7 AC145207.1-201ENST00000415556 691 ntTSL 4 BASIC20.37■□□□□ 0.85
KRT28Q7Z3Y7 LINC00466-203ENST00000436475 1059 ntTSL 5 BASIC20.37■□□□□ 0.85
KRT28Q7Z3Y7 SKA2-202ENST00000437036 625 ntTSL 2 BASIC20.37■□□□□ 0.85
KRT28Q7Z3Y7 RBM8B-201ENST00000555532 525 ntBASIC20.37■□□□□ 0.85
KRT28Q7Z3Y7 UPF3AP2-202ENST00000578315 730 ntTSL 5 BASIC20.37■□□□□ 0.85
KRT28Q7Z3Y7 SPACA3-205ENST00000580599 949 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
KRT28Q7Z3Y7 PLIN5-202ENST00000586133 907 ntTSL 3 BASIC20.37■□□□□ 0.85
KRT28Q7Z3Y7 AC009264.1-206ENST00000592183 534 ntTSL 4 BASIC20.37■□□□□ 0.85
KRT28Q7Z3Y7 HPN-206ENST00000597419 1212 ntTSL 5 BASIC20.37■□□□□ 0.85
KRT28Q7Z3Y7 AC011462.2-201ENST00000598887 344 ntTSL 5 BASIC20.37■□□□□ 0.85
KRT28Q7Z3Y7 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC20.37■□□□□ 0.85
KRT28Q7Z3Y7 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC20.37■□□□□ 0.85
KRT28Q7Z3Y7 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC20.37■□□□□ 0.85
KRT28Q7Z3Y7 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
KRT28Q7Z3Y7 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC20.37■□□□□ 0.85
KRT28Q7Z3Y7 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
KRT28Q7Z3Y7 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
KRT28Q7Z3Y7 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
KRT28Q7Z3Y7 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
KRT28Q7Z3Y7 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
KRT28Q7Z3Y7 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
KRT28Q7Z3Y7 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
KRT28Q7Z3Y7 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
KRT28Q7Z3Y7 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC20.36■□□□□ 0.85
KRT28Q7Z3Y7 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC20.36■□□□□ 0.85
KRT28Q7Z3Y7 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
KRT28Q7Z3Y7 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
KRT28Q7Z3Y7 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
KRT28Q7Z3Y7 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
KRT28Q7Z3Y7 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
KRT28Q7Z3Y7 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
KRT28Q7Z3Y7 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC20.36■□□□□ 0.85
KRT28Q7Z3Y7 AD000864.1-201ENST00000624076 2295 ntBASIC20.36■□□□□ 0.85
KRT28Q7Z3Y7 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC20.36■□□□□ 0.85
KRT28Q7Z3Y7 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC20.36■□□□□ 0.85
KRT28Q7Z3Y7 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
KRT28Q7Z3Y7 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
KRT28Q7Z3Y7 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
KRT28Q7Z3Y7 SOD2-202ENST00000367054 815 ntTSL 2 BASIC20.36■□□□□ 0.85
KRT28Q7Z3Y7 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
KRT28Q7Z3Y7 SERF2-209ENST00000409646 559 ntTSL 4 BASIC20.36■□□□□ 0.85
KRT28Q7Z3Y7 AC012362.1-201ENST00000434906 739 ntBASIC20.36■□□□□ 0.85
KRT28Q7Z3Y7 AL365295.1-203ENST00000435322 566 ntTSL 4 BASIC20.36■□□□□ 0.85
KRT28Q7Z3Y7 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC20.36■□□□□ 0.85
KRT28Q7Z3Y7 TREX1-202ENST00000444177 1200 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
KRT28Q7Z3Y7 BUD31-205ENST00000456893 512 ntTSL 5 BASIC20.36■□□□□ 0.85
KRT28Q7Z3Y7 ZSCAN10-205ENST00000572548 618 ntTSL 3 BASIC20.36■□□□□ 0.85
KRT28Q7Z3Y7 PHBP15-201ENST00000574228 665 ntBASIC20.36■□□□□ 0.85
KRT28Q7Z3Y7 AC006435.2-201ENST00000574290 846 ntTSL 5 BASIC20.36■□□□□ 0.85
KRT28Q7Z3Y7 AC127024.7-201ENST00000625101 200 ntBASIC20.36■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms