Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AL157813.1-201ENST00000612996 587 ntBASIC18.39■□□□□ 0.53
CCDC88AQ3V6T2 AC073911.3-201ENST00000624401 631 ntBASIC18.39■□□□□ 0.53
CCDC88AQ3V6T2 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC88AQ3V6T2 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC18.39■□□□□ 0.53
CCDC88AQ3V6T2 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC88AQ3V6T2 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC88AQ3V6T2 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC88AQ3V6T2 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC88AQ3V6T2 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC88AQ3V6T2 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC18.38■□□□□ 0.53
CCDC88AQ3V6T2 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC88AQ3V6T2 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC88AQ3V6T2 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
CCDC88AQ3V6T2 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC88AQ3V6T2 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC88AQ3V6T2 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC88AQ3V6T2 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC18.38■□□□□ 0.53
CCDC88AQ3V6T2 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
CCDC88AQ3V6T2 KRT18P36-201ENST00000411618 1276 ntBASIC18.38■□□□□ 0.53
CCDC88AQ3V6T2 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC18.38■□□□□ 0.53
CCDC88AQ3V6T2 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC18.38■□□□□ 0.53
CCDC88AQ3V6T2 RN7SL163P-201ENST00000583100 276 ntBASIC18.38■□□□□ 0.53
CCDC88AQ3V6T2 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC18.38■□□□□ 0.53
CCDC88AQ3V6T2 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC18.38■□□□□ 0.53
CCDC88AQ3V6T2 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC18.38■□□□□ 0.53
CCDC88AQ3V6T2 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC88AQ3V6T2 AC009093.2-202ENST00000620513 2079 ntBASIC18.38■□□□□ 0.53
CCDC88AQ3V6T2 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC18.38■□□□□ 0.53
CCDC88AQ3V6T2 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC88AQ3V6T2 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC88AQ3V6T2 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC18.38■□□□□ 0.53
CCDC88AQ3V6T2 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC88AQ3V6T2 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
CCDC88AQ3V6T2 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC18.37■□□□□ 0.53
CCDC88AQ3V6T2 CMTM5-201ENST00000339180 1173 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC88AQ3V6T2 CMTM5-202ENST00000342473 725 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC88AQ3V6T2 CMTM5-205ENST00000397227 818 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC88AQ3V6T2 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
CCDC88AQ3V6T2 LINC00466-203ENST00000436475 1059 ntTSL 5 BASIC18.37■□□□□ 0.53
CCDC88AQ3V6T2 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC18.37■□□□□ 0.53
CCDC88AQ3V6T2 TNNT2-214ENST00000458432 1182 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
CCDC88AQ3V6T2 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC18.37■□□□□ 0.53
CCDC88AQ3V6T2 CMTM5-208ENST00000555731 831 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC88AQ3V6T2 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC18.37■□□□□ 0.53
CCDC88AQ3V6T2 C2orf69P1-201ENST00000563532 1093 ntBASIC18.37■□□□□ 0.53
CCDC88AQ3V6T2 NAT9-220ENST00000582870 896 ntTSL 5 BASIC18.37■□□□□ 0.53
CCDC88AQ3V6T2 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC18.37■□□□□ 0.53
CCDC88AQ3V6T2 ZNF586-204ENST00000598183 603 ntTSL 5 BASIC18.37■□□□□ 0.53
CCDC88AQ3V6T2 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC18.37■□□□□ 0.53
CCDC88AQ3V6T2 AC025262.2-201ENST00000623975 1056 ntBASIC18.37■□□□□ 0.53
CCDC88AQ3V6T2 AC127024.7-201ENST00000625101 200 ntBASIC18.37■□□□□ 0.53
CCDC88AQ3V6T2 CMC2-224ENST00000630396 481 ntTSL 5 BASIC18.37■□□□□ 0.53
CCDC88AQ3V6T2 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC88AQ3V6T2 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC18.37■□□□□ 0.53
CCDC88AQ3V6T2 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC88AQ3V6T2 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
CCDC88AQ3V6T2 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC88AQ3V6T2 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC18.37■□□□□ 0.53
CCDC88AQ3V6T2 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC18.37■□□□□ 0.53
CCDC88AQ3V6T2 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC88AQ3V6T2 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC88AQ3V6T2 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC88AQ3V6T2 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC88AQ3V6T2 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC88AQ3V6T2 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC88AQ3V6T2 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC88AQ3V6T2 AL590093.1-201ENST00000416119 623 ntTSL 5 BASIC18.37■□□□□ 0.53
CCDC88AQ3V6T2 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC18.37■□□□□ 0.53
CCDC88AQ3V6T2 RPL7P35-201ENST00000446943 740 ntBASIC18.37■□□□□ 0.53
CCDC88AQ3V6T2 AP000358.1-201ENST00000456260 156 ntBASIC18.37■□□□□ 0.53
CCDC88AQ3V6T2 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC18.37■□□□□ 0.53
CCDC88AQ3V6T2 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC88AQ3V6T2 MIR5196-201ENST00000578146 115 ntBASIC18.37■□□□□ 0.53
CCDC88AQ3V6T2 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
CCDC88AQ3V6T2 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
CCDC88AQ3V6T2 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
CCDC88AQ3V6T2 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC88AQ3V6T2 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
CCDC88AQ3V6T2 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC18.36■□□□□ 0.53
CCDC88AQ3V6T2 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC88AQ3V6T2 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC88AQ3V6T2 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC18.36■□□□□ 0.53
CCDC88AQ3V6T2 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC18.36■□□□□ 0.53
CCDC88AQ3V6T2 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC88AQ3V6T2 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC88AQ3V6T2 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
CCDC88AQ3V6T2 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC88AQ3V6T2 E2F3P2-201ENST00000447755 1422 ntBASIC18.36■□□□□ 0.53
CCDC88AQ3V6T2 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC18.36■□□□□ 0.53
CCDC88AQ3V6T2 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC88AQ3V6T2 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
CCDC88AQ3V6T2 FAM90A7P-201ENST00000382628 1395 ntBASIC18.36■□□□□ 0.53
CCDC88AQ3V6T2 FAM90A23P-201ENST00000400136 1395 ntBASIC18.36■□□□□ 0.53
CCDC88AQ3V6T2 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC88AQ3V6T2 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
CCDC88AQ3V6T2 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC88AQ3V6T2 FAM69C-202ENST00000400291 1329 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC88AQ3V6T2 SYCN-201ENST00000318438 573 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC88AQ3V6T2 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC88AQ3V6T2 AL627231.1-201ENST00000394467 1125 ntBASIC18.36■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms