Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RFX4Q33E94 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC14.35□□□□□ -0.11
RFX4Q33E94 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RFX4Q33E94 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC14.35□□□□□ -0.11
RFX4Q33E94 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RFX4Q33E94 MED15P5-201ENST00000423150 992 ntBASIC14.35□□□□□ -0.11
RFX4Q33E94 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC14.35□□□□□ -0.11
RFX4Q33E94 FDX1P1-201ENST00000449115 551 ntBASIC14.35□□□□□ -0.11
RFX4Q33E94 AL139010.1-201ENST00000454878 894 ntBASIC14.35□□□□□ -0.11
RFX4Q33E94 RN7SL589P-201ENST00000481268 310 ntBASIC14.35□□□□□ -0.11
RFX4Q33E94 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC14.35□□□□□ -0.11
RFX4Q33E94 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC14.35□□□□□ -0.11
RFX4Q33E94 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
RFX4Q33E94 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
RFX4Q33E94 AC140113.2-201ENST00000604370 208 ntBASIC14.35□□□□□ -0.11
RFX4Q33E94 FAM197Y3-203ENST00000618346 717 ntBASIC14.35□□□□□ -0.11
RFX4Q33E94 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC14.35□□□□□ -0.11
RFX4Q33E94 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC14.35□□□□□ -0.11
RFX4Q33E94 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RFX4Q33E94 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
RFX4Q33E94 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
RFX4Q33E94 AC152010.1-201ENST00000415779 2006 ntBASIC14.35□□□□□ -0.11
RFX4Q33E94 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RFX4Q33E94 PPP1R26P4-201ENST00000619065 3527 ntBASIC14.35□□□□□ -0.11
RFX4Q33E94 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC14.35□□□□□ -0.11
RFX4Q33E94 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RFX4Q33E94 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RFX4Q33E94 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
RFX4Q33E94 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RFX4Q33E94 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
RFX4Q33E94 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
RFX4Q33E94 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC14.35□□□□□ -0.11
RFX4Q33E94 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
RFX4Q33E94 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
RFX4Q33E94 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
RFX4Q33E94 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC14.35□□□□□ -0.11
RFX4Q33E94 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RFX4Q33E94 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RFX4Q33E94 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
RFX4Q33E94 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RFX4Q33E94 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RFX4Q33E94 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC14.35□□□□□ -0.11
RFX4Q33E94 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
RFX4Q33E94 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RFX4Q33E94 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
RFX4Q33E94 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
RFX4Q33E94 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RFX4Q33E94 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
RFX4Q33E94 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
RFX4Q33E94 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RFX4Q33E94 CICP11-201ENST00000434745 2827 ntBASIC14.34□□□□□ -0.11
RFX4Q33E94 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
RFX4Q33E94 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
RFX4Q33E94 AC015802.1-201ENST00000588104 1449 ntBASIC14.34□□□□□ -0.11
RFX4Q33E94 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RFX4Q33E94 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RFX4Q33E94 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
RFX4Q33E94 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
RFX4Q33E94 PTENP1-202ENST00000532280 3996 ntBASIC14.34□□□□□ -0.11
RFX4Q33E94 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC14.34□□□□□ -0.11
RFX4Q33E94 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC14.34□□□□□ -0.11
RFX4Q33E94 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC14.34□□□□□ -0.11
RFX4Q33E94 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RFX4Q33E94 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RFX4Q33E94 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RFX4Q33E94 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RFX4Q33E94 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
RFX4Q33E94 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC14.34□□□□□ -0.11
RFX4Q33E94 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC14.34□□□□□ -0.11
RFX4Q33E94 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC14.34□□□□□ -0.11
RFX4Q33E94 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
RFX4Q33E94 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC14.34□□□□□ -0.11
RFX4Q33E94 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC14.34□□□□□ -0.11
RFX4Q33E94 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC14.34□□□□□ -0.11
RFX4Q33E94 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
RFX4Q33E94 AC243562.1-201ENST00000560672 389 ntBASIC14.34□□□□□ -0.11
RFX4Q33E94 AC106730.1-201ENST00000566722 1090 ntBASIC14.34□□□□□ -0.11
RFX4Q33E94 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC14.34□□□□□ -0.11
RFX4Q33E94 COX5A-206ENST00000568783 571 ntTSL 3 BASIC14.34□□□□□ -0.11
RFX4Q33E94 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RFX4Q33E94 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC14.34□□□□□ -0.11
RFX4Q33E94 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC14.34□□□□□ -0.11
RFX4Q33E94 BX640515.1-201ENST00000617215 977 ntBASIC14.34□□□□□ -0.11
RFX4Q33E94 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC14.34□□□□□ -0.11
RFX4Q33E94 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC14.34□□□□□ -0.11
RFX4Q33E94 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
RFX4Q33E94 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
RFX4Q33E94 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
RFX4Q33E94 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
RFX4Q33E94 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
RFX4Q33E94 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
RFX4Q33E94 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC14.34□□□□□ -0.11
RFX4Q33E94 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC14.34□□□□□ -0.11
RFX4Q33E94 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC14.34□□□□□ -0.11
RFX4Q33E94 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
RFX4Q33E94 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
RFX4Q33E94 CYP4F24P-201ENST00000586049 1580 ntBASIC14.34□□□□□ -0.11
RFX4Q33E94 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
RFX4Q33E94 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC14.34□□□□□ -0.11
RFX4Q33E94 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms