Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC16.27■□□□□ 0.2
SOX4Q06945 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC16.27■□□□□ 0.2
SOX4Q06945 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
SOX4Q06945 Z93015.1-201ENST00000451718 390 ntBASIC16.27■□□□□ 0.2
SOX4Q06945 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SOX4Q06945 RPSAP36-202ENST00000494591 1261 ntBASIC16.27■□□□□ 0.2
SOX4Q06945 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
SOX4Q06945 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC16.27■□□□□ 0.2
SOX4Q06945 ZNF767P-206ENST00000513792 565 ntBASIC16.27■□□□□ 0.2
SOX4Q06945 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC16.27■□□□□ 0.2
SOX4Q06945 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC16.27■□□□□ 0.2
SOX4Q06945 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC16.27■□□□□ 0.2
SOX4Q06945 CYGB-203ENST00000589145 788 ntTSL 3 BASIC16.27■□□□□ 0.2
SOX4Q06945 ABBA01031663.1-201ENST00000635630 790 ntBASIC16.27■□□□□ 0.2
SOX4Q06945 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
SOX4Q06945 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SOX4Q06945 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SOX4Q06945 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
SOX4Q06945 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
SOX4Q06945 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
SOX4Q06945 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
SOX4Q06945 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
SOX4Q06945 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
SOX4Q06945 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
SOX4Q06945 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC16.27■□□□□ 0.19
SOX4Q06945 AC138035.3-201ENST00000622706 2791 ntBASIC16.26■□□□□ 0.19
SOX4Q06945 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC16.26■□□□□ 0.19
SOX4Q06945 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SOX4Q06945 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SOX4Q06945 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC16.26■□□□□ 0.19
SOX4Q06945 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC16.26■□□□□ 0.19
SOX4Q06945 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SOX4Q06945 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SOX4Q06945 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SOX4Q06945 AL023775.1-201ENST00000454907 1746 ntBASIC16.26■□□□□ 0.19
SOX4Q06945 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SOX4Q06945 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC16.26■□□□□ 0.19
SOX4Q06945 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC16.26■□□□□ 0.19
SOX4Q06945 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SOX4Q06945 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SOX4Q06945 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
SOX4Q06945 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
SOX4Q06945 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC16.26■□□□□ 0.19
SOX4Q06945 AC007969.1-201ENST00000433675 447 ntBASIC16.26■□□□□ 0.19
SOX4Q06945 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC16.26■□□□□ 0.19
SOX4Q06945 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC16.26■□□□□ 0.19
SOX4Q06945 MESTP3-201ENST00000503460 968 ntBASIC16.26■□□□□ 0.19
SOX4Q06945 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC16.26■□□□□ 0.19
SOX4Q06945 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SOX4Q06945 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC16.26■□□□□ 0.19
SOX4Q06945 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC16.26■□□□□ 0.19
SOX4Q06945 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC16.26■□□□□ 0.19
SOX4Q06945 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC16.26■□□□□ 0.19
SOX4Q06945 RN7SL713P-201ENST00000582127 302 ntBASIC16.26■□□□□ 0.19
SOX4Q06945 EEF1DP1-201ENST00000585891 896 ntBASIC16.26■□□□□ 0.19
SOX4Q06945 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
SOX4Q06945 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC16.26■□□□□ 0.19
SOX4Q06945 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC16.26■□□□□ 0.19
SOX4Q06945 AC091271.1-201ENST00000611877 1162 ntBASIC16.26■□□□□ 0.19
SOX4Q06945 INE2-201ENST00000630399 1874 ntBASIC16.26■□□□□ 0.19
SOX4Q06945 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
SOX4Q06945 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SOX4Q06945 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC16.26■□□□□ 0.19
SOX4Q06945 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SOX4Q06945 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
SOX4Q06945 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC16.26■□□□□ 0.19
SOX4Q06945 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC16.26■□□□□ 0.19
SOX4Q06945 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
SOX4Q06945 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC16.26■□□□□ 0.19
SOX4Q06945 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SOX4Q06945 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC16.26■□□□□ 0.19
SOX4Q06945 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SOX4Q06945 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SOX4Q06945 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
SOX4Q06945 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC16.25■□□□□ 0.19
SOX4Q06945 AC073347.1-201ENST00000421633 2643 ntBASIC16.25■□□□□ 0.19
SOX4Q06945 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC16.25■□□□□ 0.19
SOX4Q06945 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SOX4Q06945 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
SOX4Q06945 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC16.25■□□□□ 0.19
SOX4Q06945 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SOX4Q06945 AC013268.4-201ENST00000637413 2228 ntBASIC16.25■□□□□ 0.19
SOX4Q06945 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC16.25■□□□□ 0.19
SOX4Q06945 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC16.25■□□□□ 0.19
SOX4Q06945 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC16.25■□□□□ 0.19
SOX4Q06945 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SOX4Q06945 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SOX4Q06945 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
SOX4Q06945 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SOX4Q06945 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SOX4Q06945 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SOX4Q06945 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
SOX4Q06945 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SOX4Q06945 RGS5-214ENST00000429865 754 ntTSL 3 BASIC16.25■□□□□ 0.19
SOX4Q06945 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
SOX4Q06945 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC16.25■□□□□ 0.19
SOX4Q06945 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC16.25■□□□□ 0.19
SOX4Q06945 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SOX4Q06945 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC16.25■□□□□ 0.19
SOX4Q06945 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC16.25■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 72.3 ms