Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
YBX1P67809 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
YBX1P67809 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
YBX1P67809 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC14.96□□□□□ -0.01
YBX1P67809 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
YBX1P67809 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC14.96□□□□□ -0.01
YBX1P67809 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
YBX1P67809 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
YBX1P67809 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC14.96□□□□□ -0.01
YBX1P67809 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
YBX1P67809 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC14.96□□□□□ -0.01
YBX1P67809 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
YBX1P67809 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
YBX1P67809 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
YBX1P67809 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
YBX1P67809 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC14.96□□□□□ -0.01
YBX1P67809 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
YBX1P67809 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC14.96□□□□□ -0.01
YBX1P67809 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC14.96□□□□□ -0.01
YBX1P67809 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
YBX1P67809 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC14.96□□□□□ -0.01
YBX1P67809 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC14.96□□□□□ -0.01
YBX1P67809 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
YBX1P67809 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
YBX1P67809 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
YBX1P67809 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
YBX1P67809 AC140912.1-201ENST00000577171 1054 ntBASIC14.96□□□□□ -0.01
YBX1P67809 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
YBX1P67809 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC14.96□□□□□ -0.01
YBX1P67809 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC14.96□□□□□ -0.01
YBX1P67809 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC14.96□□□□□ -0.01
YBX1P67809 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
YBX1P67809 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
YBX1P67809 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
YBX1P67809 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.02
YBX1P67809 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.02
YBX1P67809 AMT-232ENST00000636199 1546 ntTSL 5 BASIC14.96□□□□□ -0.02
YBX1P67809 AL391825.1-201ENST00000457671 1364 ntBASIC14.96□□□□□ -0.02
YBX1P67809 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC14.96□□□□□ -0.02
YBX1P67809 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.02
YBX1P67809 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC14.96□□□□□ -0.02
YBX1P67809 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.02
YBX1P67809 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
YBX1P67809 ZBED1P1-201ENST00000502364 1930 ntBASIC14.96□□□□□ -0.02
YBX1P67809 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC14.96□□□□□ -0.02
YBX1P67809 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.02
YBX1P67809 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
YBX1P67809 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
YBX1P67809 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
YBX1P67809 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
YBX1P67809 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
YBX1P67809 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC14.95□□□□□ -0.02
YBX1P67809 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
YBX1P67809 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
YBX1P67809 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC14.95□□□□□ -0.02
YBX1P67809 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
YBX1P67809 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC14.95□□□□□ -0.02
YBX1P67809 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
YBX1P67809 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
YBX1P67809 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC14.95□□□□□ -0.02
YBX1P67809 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
YBX1P67809 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
YBX1P67809 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC14.95□□□□□ -0.02
YBX1P67809 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
YBX1P67809 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
YBX1P67809 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
YBX1P67809 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC14.95□□□□□ -0.02
YBX1P67809 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
YBX1P67809 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
YBX1P67809 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC14.95□□□□□ -0.02
YBX1P67809 GSAP-205ENST00000430584 600 ntTSL 5 BASIC14.95□□□□□ -0.02
YBX1P67809 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
YBX1P67809 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC14.95□□□□□ -0.02
YBX1P67809 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
YBX1P67809 HNRNPA1P13-201ENST00000510646 963 ntBASIC14.95□□□□□ -0.02
YBX1P67809 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC14.95□□□□□ -0.02
YBX1P67809 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC14.95□□□□□ -0.02
YBX1P67809 AC092552.1-201ENST00000547243 906 ntBASIC14.95□□□□□ -0.02
YBX1P67809 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
YBX1P67809 RRP7BP-205ENST00000566851 833 ntBASIC14.95□□□□□ -0.02
YBX1P67809 BRI3BPP1-201ENST00000594224 787 ntBASIC14.95□□□□□ -0.02
YBX1P67809 AL049840.4-201ENST00000602422 811 ntBASIC14.95□□□□□ -0.02
YBX1P67809 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC14.95□□□□□ -0.02
YBX1P67809 AC025048.6-201ENST00000634326 1161 ntBASIC14.95□□□□□ -0.02
YBX1P67809 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC14.95□□□□□ -0.02
YBX1P67809 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC14.95□□□□□ -0.02
YBX1P67809 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
YBX1P67809 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
YBX1P67809 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
YBX1P67809 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC14.95□□□□□ -0.02
YBX1P67809 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
YBX1P67809 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
YBX1P67809 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
YBX1P67809 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
YBX1P67809 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC14.94□□□□□ -0.02
YBX1P67809 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
YBX1P67809 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
YBX1P67809 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
YBX1P67809 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
YBX1P67809 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 56.1 ms