Protein–RNA interactions for Protein: P55289

CDH12, Cadherin-12, humanhuman

Predictions only

Length 794 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH12P55289 RPL30-202ENST00000396070 440 ntTSL 2 BASIC14.38□□□□□ -0.11
CDH12P55289 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CDH12P55289 MTND6P24-201ENST00000440466 518 ntBASIC14.38□□□□□ -0.11
CDH12P55289 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC14.38□□□□□ -0.11
CDH12P55289 AC023141.5-201ENST00000458585 616 ntBASIC14.38□□□□□ -0.11
CDH12P55289 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC14.38□□□□□ -0.11
CDH12P55289 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC14.38□□□□□ -0.11
CDH12P55289 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
CDH12P55289 MIR4453-201ENST00000584019 89 ntBASIC14.38□□□□□ -0.11
CDH12P55289 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC14.38□□□□□ -0.11
CDH12P55289 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC14.38□□□□□ -0.11
CDH12P55289 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC14.38□□□□□ -0.11
CDH12P55289 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CDH12P55289 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
CDH12P55289 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CDH12P55289 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CDH12P55289 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CDH12P55289 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CDH12P55289 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CDH12P55289 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC14.38□□□□□ -0.11
CDH12P55289 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CDH12P55289 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC14.38□□□□□ -0.11
CDH12P55289 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC14.38□□□□□ -0.11
CDH12P55289 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC14.38□□□□□ -0.11
CDH12P55289 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
CDH12P55289 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CDH12P55289 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
CDH12P55289 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CDH12P55289 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CDH12P55289 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
CDH12P55289 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CDH12P55289 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
CDH12P55289 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CDH12P55289 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
CDH12P55289 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CDH12P55289 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CDH12P55289 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CDH12P55289 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CDH12P55289 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
CDH12P55289 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC14.37□□□□□ -0.11
CDH12P55289 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC14.37□□□□□ -0.11
CDH12P55289 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
CDH12P55289 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
CDH12P55289 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC14.37□□□□□ -0.11
CDH12P55289 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC14.37□□□□□ -0.11
CDH12P55289 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC14.37□□□□□ -0.11
CDH12P55289 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC14.37□□□□□ -0.11
CDH12P55289 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC14.37□□□□□ -0.11
CDH12P55289 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CDH12P55289 AL035456.1-201ENST00000456064 1369 ntBASIC14.37□□□□□ -0.11
CDH12P55289 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CDH12P55289 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CDH12P55289 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC14.37□□□□□ -0.11
CDH12P55289 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CDH12P55289 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC14.37□□□□□ -0.11
CDH12P55289 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC14.37□□□□□ -0.11
CDH12P55289 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CDH12P55289 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC14.37□□□□□ -0.11
CDH12P55289 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC14.37□□□□□ -0.11
CDH12P55289 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC14.37□□□□□ -0.11
CDH12P55289 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
CDH12P55289 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CDH12P55289 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CDH12P55289 AC211486.1-202ENST00000416371 468 ntBASIC14.37□□□□□ -0.11
CDH12P55289 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC14.37□□□□□ -0.11
CDH12P55289 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC14.37□□□□□ -0.11
CDH12P55289 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CDH12P55289 AC211476.1-201ENST00000503899 468 ntBASIC14.37□□□□□ -0.11
CDH12P55289 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC14.37□□□□□ -0.11
CDH12P55289 DHDH-204ENST00000523250 634 ntTSL 5 BASIC14.37□□□□□ -0.11
CDH12P55289 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC14.37□□□□□ -0.11
CDH12P55289 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC14.37□□□□□ -0.11
CDH12P55289 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CDH12P55289 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC14.37□□□□□ -0.11
CDH12P55289 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC14.37□□□□□ -0.11
CDH12P55289 MIR6080-201ENST00000617359 66 ntBASIC14.37□□□□□ -0.11
CDH12P55289 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
CDH12P55289 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
CDH12P55289 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
CDH12P55289 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
CDH12P55289 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC14.37□□□□□ -0.11
CDH12P55289 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC14.37□□□□□ -0.11
CDH12P55289 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC14.37□□□□□ -0.11
CDH12P55289 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CDH12P55289 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
CDH12P55289 GRN-214ENST00000589265 1632 ntTSL 5 BASIC14.37□□□□□ -0.11
CDH12P55289 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC14.37□□□□□ -0.11
CDH12P55289 REXO1L2P-201ENST00000425429 2069 ntBASIC14.37□□□□□ -0.11
CDH12P55289 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CDH12P55289 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
CDH12P55289 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC14.36□□□□□ -0.11
CDH12P55289 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC14.36□□□□□ -0.11
CDH12P55289 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
CDH12P55289 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC14.36□□□□□ -0.11
CDH12P55289 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
CDH12P55289 KRT8P12-202ENST00000472924 1397 ntBASIC14.36□□□□□ -0.11
CDH12P55289 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CDH12P55289 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CDH12P55289 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CDH12P55289 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC14.36□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms