Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 SPCS2P1-201ENST00000561636 679 ntBASIC12.66□□□□□ -0.38
CDX1P47902 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CDX1P47902 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC12.66□□□□□ -0.38
CDX1P47902 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
CDX1P47902 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC12.66□□□□□ -0.38
CDX1P47902 AC005498.2-205ENST00000593218 784 ntBASIC12.66□□□□□ -0.38
CDX1P47902 AL096865.1-201ENST00000606796 927 ntBASIC12.66□□□□□ -0.38
CDX1P47902 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CDX1P47902 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CDX1P47902 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC12.66□□□□□ -0.38
CDX1P47902 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
CDX1P47902 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CDX1P47902 TBC1D9B-208ENST00000519746 2755 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
CDX1P47902 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC12.66□□□□□ -0.38
CDX1P47902 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC12.66□□□□□ -0.38
CDX1P47902 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
CDX1P47902 DKFZP434H168-201ENST00000567381 1905 ntBASIC12.66□□□□□ -0.38
CDX1P47902 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CDX1P47902 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CDX1P47902 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
CDX1P47902 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
CDX1P47902 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CDX1P47902 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC12.66□□□□□ -0.38
CDX1P47902 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC12.66□□□□□ -0.38
CDX1P47902 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC12.66□□□□□ -0.38
CDX1P47902 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC12.66□□□□□ -0.38
CDX1P47902 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CDX1P47902 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
CDX1P47902 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC12.66□□□□□ -0.38
CDX1P47902 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CDX1P47902 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
CDX1P47902 RALGAPA1-201ENST00000307138 7911 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CDX1P47902 AC013460.1-202ENST00000435062 2253 ntTSL 2 BASIC12.65□□□□□ -0.38
CDX1P47902 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CDX1P47902 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
CDX1P47902 SNX20-202ENST00000330943 2904 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CDX1P47902 DNAJC3-AS1-201ENST00000499499 2908 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
CDX1P47902 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC12.65□□□□□ -0.38
CDX1P47902 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
CDX1P47902 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CDX1P47902 Z99774.1-201ENST00000382641 2613 ntTSL 2 BASIC12.65□□□□□ -0.38
CDX1P47902 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CDX1P47902 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
CDX1P47902 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC12.65□□□□□ -0.38
CDX1P47902 EHMT2-201ENST00000375528 4047 ntAPPRIS ALT2 TSL 2 BASIC12.65□□□□□ -0.38
CDX1P47902 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CDX1P47902 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CDX1P47902 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
CDX1P47902 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC12.65□□□□□ -0.38
CDX1P47902 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC12.65□□□□□ -0.38
CDX1P47902 BMT2-201ENST00000297145 3981 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CDX1P47902 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CDX1P47902 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
CDX1P47902 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CDX1P47902 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC12.65□□□□□ -0.38
CDX1P47902 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CDX1P47902 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
CDX1P47902 POU5F1P6-201ENST00000466990 990 ntBASIC12.65□□□□□ -0.38
CDX1P47902 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC12.65□□□□□ -0.38
CDX1P47902 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CDX1P47902 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
CDX1P47902 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC12.65□□□□□ -0.38
CDX1P47902 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC12.65□□□□□ -0.38
CDX1P47902 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC12.65□□□□□ -0.38
CDX1P47902 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC12.65□□□□□ -0.38
CDX1P47902 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC12.65□□□□□ -0.38
CDX1P47902 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
CDX1P47902 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
CDX1P47902 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC12.65□□□□□ -0.38
CDX1P47902 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CDX1P47902 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC12.65□□□□□ -0.38
CDX1P47902 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CDX1P47902 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC12.65□□□□□ -0.38
CDX1P47902 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CDX1P47902 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
CDX1P47902 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CDX1P47902 C8orf31-201ENST00000395172 1875 ntTSL 2 BASIC12.65□□□□□ -0.38
CDX1P47902 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC12.65□□□□□ -0.38
CDX1P47902 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC12.65□□□□□ -0.38
CDX1P47902 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC12.65□□□□□ -0.38
CDX1P47902 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CDX1P47902 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC12.65□□□□□ -0.38
CDX1P47902 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CDX1P47902 SHPK-201ENST00000225519 3838 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CDX1P47902 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC12.65□□□□□ -0.38
CDX1P47902 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC12.65□□□□□ -0.38
CDX1P47902 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC12.65□□□□□ -0.39
CDX1P47902 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.39
CDX1P47902 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.39
CDX1P47902 SLFNL1-204ENST00000372613 2654 ntTSL 2 BASIC12.65□□□□□ -0.39
CDX1P47902 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC12.64□□□□□ -0.39
CDX1P47902 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
CDX1P47902 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CDX1P47902 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC12.64□□□□□ -0.39
CDX1P47902 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC12.64□□□□□ -0.39
CDX1P47902 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC12.64□□□□□ -0.39
CDX1P47902 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CDX1P47902 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CDX1P47902 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CDX1P47902 MFSD11-217ENST00000590514 1891 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms