Protein–RNA interactions for Protein: P35398

RORA, Nuclear receptor ROR-alpha, humanhuman

Predictions only

Length 523 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RORAP35398 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
RORAP35398 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
RORAP35398 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC14.61□□□□□ -0.07
RORAP35398 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
RORAP35398 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC14.61□□□□□ -0.07
RORAP35398 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
RORAP35398 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
RORAP35398 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC14.61□□□□□ -0.07
RORAP35398 AC092658.1-201ENST00000505836 891 ntBASIC14.61□□□□□ -0.07
RORAP35398 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC14.61□□□□□ -0.07
RORAP35398 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC14.61□□□□□ -0.07
RORAP35398 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
RORAP35398 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC14.61□□□□□ -0.07
RORAP35398 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC14.61□□□□□ -0.07
RORAP35398 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC14.61□□□□□ -0.07
RORAP35398 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
RORAP35398 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
RORAP35398 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC14.61□□□□□ -0.07
RORAP35398 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC14.61□□□□□ -0.07
RORAP35398 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
RORAP35398 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
RORAP35398 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
RORAP35398 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC14.61□□□□□ -0.07
RORAP35398 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
RORAP35398 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC14.61□□□□□ -0.07
RORAP35398 PAUPAR-201ENST00000630360 2965 ntBASIC14.61□□□□□ -0.07
RORAP35398 AC126755.1-201ENST00000525846 6405 ntBASIC14.61□□□□□ -0.07
RORAP35398 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC14.61□□□□□ -0.07
RORAP35398 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
RORAP35398 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC14.6□□□□□ -0.07
RORAP35398 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC14.6□□□□□ -0.07
RORAP35398 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC14.6□□□□□ -0.07
RORAP35398 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
RORAP35398 AC092127.1-201ENST00000567093 3455 ntBASIC14.6□□□□□ -0.07
RORAP35398 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
RORAP35398 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
RORAP35398 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
RORAP35398 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
RORAP35398 AC127383.1-201ENST00000444697 1800 ntBASIC14.6□□□□□ -0.07
RORAP35398 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
RORAP35398 HLA-DQB2-231ENST00000435145 2026 ntBASIC14.6□□□□□ -0.07
RORAP35398 MYB-201ENST00000316528 3571 ntTSL 5 BASIC14.6□□□□□ -0.07
RORAP35398 MYB-241ENST00000616088 3573 ntTSL 5 BASIC14.6□□□□□ -0.07
RORAP35398 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
RORAP35398 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
RORAP35398 RPF1-202ENST00000370656 724 ntTSL 2 BASIC14.6□□□□□ -0.07
RORAP35398 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
RORAP35398 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
RORAP35398 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC14.6□□□□□ -0.07
RORAP35398 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC14.6□□□□□ -0.07
RORAP35398 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
RORAP35398 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC14.6□□□□□ -0.07
RORAP35398 RNA5SP412-201ENST00000516234 123 ntBASIC14.6□□□□□ -0.07
RORAP35398 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC14.6□□□□□ -0.07
RORAP35398 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC14.6□□□□□ -0.07
RORAP35398 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC14.6□□□□□ -0.07
RORAP35398 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC14.6□□□□□ -0.07
RORAP35398 AC025279.2-201ENST00000569730 653 ntBASIC14.6□□□□□ -0.07
RORAP35398 BX539320.1-201ENST00000623759 877 ntBASIC14.6□□□□□ -0.07
RORAP35398 AL645728.2-202ENST00000641679 227 ntBASIC14.6□□□□□ -0.07
RORAP35398 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC14.6□□□□□ -0.07
RORAP35398 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC14.6□□□□□ -0.07
RORAP35398 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC14.6□□□□□ -0.07
RORAP35398 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC14.6□□□□□ -0.07
RORAP35398 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC14.6□□□□□ -0.07
RORAP35398 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
RORAP35398 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
RORAP35398 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
RORAP35398 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC14.6□□□□□ -0.07
RORAP35398 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
RORAP35398 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
RORAP35398 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC14.6□□□□□ -0.07
RORAP35398 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
RORAP35398 REXO1L6P-201ENST00000603433 1515 ntBASIC14.6□□□□□ -0.07
RORAP35398 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
RORAP35398 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
RORAP35398 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC14.6□□□□□ -0.07
RORAP35398 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC14.6□□□□□ -0.07
RORAP35398 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC14.6□□□□□ -0.07
RORAP35398 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
RORAP35398 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC14.6□□□□□ -0.07
RORAP35398 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
RORAP35398 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC14.59□□□□□ -0.07
RORAP35398 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
RORAP35398 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
RORAP35398 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
RORAP35398 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
RORAP35398 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC14.59□□□□□ -0.07
RORAP35398 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
RORAP35398 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
RORAP35398 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
RORAP35398 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC14.59□□□□□ -0.07
RORAP35398 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC14.59□□□□□ -0.07
RORAP35398 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
RORAP35398 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
RORAP35398 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC14.59□□□□□ -0.07
RORAP35398 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC14.59□□□□□ -0.07
RORAP35398 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
RORAP35398 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC14.59□□□□□ -0.07
RORAP35398 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC14.59□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 80.8 ms