Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HOXC9P31274 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC20.03■□□□□ 0.8
HOXC9P31274 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
HOXC9P31274 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
HOXC9P31274 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC20.03■□□□□ 0.8
HOXC9P31274 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
HOXC9P31274 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HOXC9P31274 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
HOXC9P31274 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
HOXC9P31274 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
HOXC9P31274 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
HOXC9P31274 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC20.03■□□□□ 0.8
HOXC9P31274 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC20.03■□□□□ 0.8
HOXC9P31274 PUDPP3-201ENST00000445368 636 ntBASIC20.03■□□□□ 0.8
HOXC9P31274 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC20.03■□□□□ 0.8
HOXC9P31274 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC20.03■□□□□ 0.8
HOXC9P31274 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC20.03■□□□□ 0.8
HOXC9P31274 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC20.03■□□□□ 0.8
HOXC9P31274 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC20.03■□□□□ 0.8
HOXC9P31274 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC20.03■□□□□ 0.8
HOXC9P31274 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC20.03■□□□□ 0.8
HOXC9P31274 MIR3907-201ENST00000579424 151 ntBASIC20.03■□□□□ 0.8
HOXC9P31274 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC20.03■□□□□ 0.8
HOXC9P31274 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
HOXC9P31274 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HOXC9P31274 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC20.03■□□□□ 0.8
HOXC9P31274 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HOXC9P31274 LILRP1-201ENST00000444199 1370 ntBASIC20.03■□□□□ 0.8
HOXC9P31274 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HOXC9P31274 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC20.03■□□□□ 0.8
HOXC9P31274 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HOXC9P31274 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC20.03■□□□□ 0.8
HOXC9P31274 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
HOXC9P31274 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
HOXC9P31274 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
HOXC9P31274 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
HOXC9P31274 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HOXC9P31274 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HOXC9P31274 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC20.02■□□□□ 0.8
HOXC9P31274 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC20.02■□□□□ 0.8
HOXC9P31274 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
HOXC9P31274 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
HOXC9P31274 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HOXC9P31274 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HOXC9P31274 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HOXC9P31274 FXNP2-201ENST00000411625 547 ntBASIC20.02■□□□□ 0.8
HOXC9P31274 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
HOXC9P31274 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC20.02■□□□□ 0.8
HOXC9P31274 HLA-J-204ENST00000495278 958 ntBASIC20.02■□□□□ 0.8
HOXC9P31274 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC20.02■□□□□ 0.8
HOXC9P31274 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC20.02■□□□□ 0.8
HOXC9P31274 MIR4706-201ENST00000582134 82 ntBASIC20.02■□□□□ 0.8
HOXC9P31274 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC20.02■□□□□ 0.8
HOXC9P31274 AC003102.2-201ENST00000589195 1469 ntBASIC20.02■□□□□ 0.8
HOXC9P31274 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
HOXC9P31274 AC244394.1-201ENST00000435000 1665 ntBASIC20.02■□□□□ 0.8
HOXC9P31274 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC20.02■□□□□ 0.8
HOXC9P31274 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HOXC9P31274 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC20.02■□□□□ 0.8
HOXC9P31274 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC20.02■□□□□ 0.79
HOXC9P31274 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
HOXC9P31274 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC20.02■□□□□ 0.79
HOXC9P31274 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC20.02■□□□□ 0.79
HOXC9P31274 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
HOXC9P31274 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
HOXC9P31274 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC20.02■□□□□ 0.79
HOXC9P31274 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC20.01■□□□□ 0.79
HOXC9P31274 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
HOXC9P31274 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HOXC9P31274 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HOXC9P31274 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC20.01■□□□□ 0.79
HOXC9P31274 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HOXC9P31274 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC20.01■□□□□ 0.79
HOXC9P31274 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC20.01■□□□□ 0.79
HOXC9P31274 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HOXC9P31274 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC20.01■□□□□ 0.79
HOXC9P31274 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
HOXC9P31274 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
HOXC9P31274 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HOXC9P31274 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC20.01■□□□□ 0.79
HOXC9P31274 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC20.01■□□□□ 0.79
HOXC9P31274 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HOXC9P31274 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
HOXC9P31274 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC20.01■□□□□ 0.79
HOXC9P31274 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
HOXC9P31274 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC20.01■□□□□ 0.79
HOXC9P31274 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC20.01■□□□□ 0.79
HOXC9P31274 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC20.01■□□□□ 0.79
HOXC9P31274 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
HOXC9P31274 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC20.01■□□□□ 0.79
HOXC9P31274 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC20.01■□□□□ 0.79
HOXC9P31274 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC20.01■□□□□ 0.79
HOXC9P31274 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC20.01■□□□□ 0.79
HOXC9P31274 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
HOXC9P31274 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC20.01■□□□□ 0.79
HOXC9P31274 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
HOXC9P31274 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
HOXC9P31274 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC20.01■□□□□ 0.79
HOXC9P31274 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC20.01■□□□□ 0.79
HOXC9P31274 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC20.01■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 63.6 ms