Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC023024.2-201ENST00000623561 1993 ntBASIC18.75■□□□□ 0.59
COL5A3P25940 AC109460.1-201ENST00000567209 1478 ntTSL 3 BASIC18.75■□□□□ 0.59
COL5A3P25940 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
COL5A3P25940 MAPK3-204ENST00000395200 997 ntTSL 3 BASIC18.75■□□□□ 0.59
COL5A3P25940 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC18.75■□□□□ 0.59
COL5A3P25940 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC18.75■□□□□ 0.59
COL5A3P25940 AC012362.1-201ENST00000434906 739 ntBASIC18.75■□□□□ 0.59
COL5A3P25940 AC018463.1-201ENST00000456674 917 ntBASIC18.75■□□□□ 0.59
COL5A3P25940 SMIM6-201ENST00000556126 866 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
COL5A3P25940 AC145207.8-201ENST00000580897 563 ntTSL 4 BASIC18.75■□□□□ 0.59
COL5A3P25940 RNASEK-210ENST00000593646 566 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL5A3P25940 AC011500.3-201ENST00000594676 647 ntTSL 4 BASIC18.75■□□□□ 0.59
COL5A3P25940 HIST1H4I-201ENST00000615353 1294 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
COL5A3P25940 AC127024.7-201ENST00000625101 200 ntBASIC18.75■□□□□ 0.59
COL5A3P25940 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL5A3P25940 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
COL5A3P25940 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC18.75■□□□□ 0.59
COL5A3P25940 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC18.75■□□□□ 0.59
COL5A3P25940 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL5A3P25940 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL5A3P25940 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL5A3P25940 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL5A3P25940 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC18.75■□□□□ 0.59
COL5A3P25940 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
COL5A3P25940 IL9RP3-201ENST00000442856 1674 ntBASIC18.75■□□□□ 0.59
COL5A3P25940 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC18.75■□□□□ 0.59
COL5A3P25940 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL5A3P25940 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL5A3P25940 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL5A3P25940 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL5A3P25940 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL5A3P25940 HPGD-203ENST00000422112 805 ntTSL 2 BASIC18.74■□□□□ 0.59
COL5A3P25940 ST13P19-201ENST00000442505 1124 ntBASIC18.74■□□□□ 0.59
COL5A3P25940 TREX1-202ENST00000444177 1200 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL5A3P25940 PGAP2-212ENST00000464906 1259 ntTSL 2 BASIC18.74■□□□□ 0.59
COL5A3P25940 EMP2-203ENST00000536829 781 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
COL5A3P25940 MIR5196-201ENST00000578146 115 ntBASIC18.74■□□□□ 0.59
COL5A3P25940 UPF3AP2-202ENST00000578315 730 ntTSL 5 BASIC18.74■□□□□ 0.59
COL5A3P25940 TMEM220-AS1-207ENST00000584714 541 ntTSL 4 BASIC18.74■□□□□ 0.59
COL5A3P25940 AC005357.2-202ENST00000590507 1060 ntBASIC18.74■□□□□ 0.59
COL5A3P25940 SLC27A5-204ENST00000594786 643 ntTSL 2 BASIC18.74■□□□□ 0.59
COL5A3P25940 TMIGD2-204ENST00000600349 333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL5A3P25940 AL161773.1-201ENST00000624845 863 ntBASIC18.74■□□□□ 0.59
COL5A3P25940 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC18.74■□□□□ 0.59
COL5A3P25940 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL5A3P25940 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL5A3P25940 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL5A3P25940 RELL1-201ENST00000314117 1326 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL5A3P25940 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC18.74■□□□□ 0.59
COL5A3P25940 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC18.74■□□□□ 0.59
COL5A3P25940 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
COL5A3P25940 MIR22HG-201ENST00000334146 1383 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL5A3P25940 NDUFB6-203ENST00000379847 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL5A3P25940 SERPINB9P1-202ENST00000545177 1375 ntTSL 3 BASIC18.74■□□□□ 0.59
COL5A3P25940 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL5A3P25940 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC18.74■□□□□ 0.59
COL5A3P25940 BANF1P3-201ENST00000412556 261 ntBASIC18.74■□□□□ 0.59
COL5A3P25940 LINC01433-201ENST00000419003 697 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL5A3P25940 AL512306.1-201ENST00000432698 848 ntBASIC18.74■□□□□ 0.59
COL5A3P25940 DCST1-AS1-201ENST00000452962 822 ntTSL 2 BASIC18.74■□□□□ 0.59
COL5A3P25940 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC18.74■□□□□ 0.59
COL5A3P25940 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL5A3P25940 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC18.74■□□□□ 0.59
COL5A3P25940 AC141586.1-203ENST00000567242 366 ntBASIC18.74■□□□□ 0.59
COL5A3P25940 AC093330.1-206ENST00000582546 812 ntTSL 3 BASIC18.74■□□□□ 0.59
COL5A3P25940 LINC01783-202ENST00000614408 828 ntBASIC18.74■□□□□ 0.59
COL5A3P25940 BX284668.2-205ENST00000619677 828 ntBASIC18.74■□□□□ 0.59
COL5A3P25940 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC18.74■□□□□ 0.59
COL5A3P25940 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL5A3P25940 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC18.74■□□□□ 0.59
COL5A3P25940 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL5A3P25940 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL5A3P25940 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
COL5A3P25940 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC18.73■□□□□ 0.59
COL5A3P25940 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL5A3P25940 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC18.73■□□□□ 0.59
COL5A3P25940 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC18.73■□□□□ 0.59
COL5A3P25940 PSMA1-202ENST00000418988 1266 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
COL5A3P25940 AC114947.1-202ENST00000514136 344 ntBASIC18.73■□□□□ 0.59
COL5A3P25940 AC068397.2-201ENST00000558742 341 ntTSL 5 BASIC18.73■□□□□ 0.59
COL5A3P25940 AC093752.3-201ENST00000567343 901 ntBASIC18.73■□□□□ 0.59
COL5A3P25940 AC011472.1-201ENST00000588634 569 ntTSL 4 BASIC18.73■□□□□ 0.59
COL5A3P25940 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC18.73■□□□□ 0.59
COL5A3P25940 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC18.73■□□□□ 0.59
COL5A3P25940 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC18.73■□□□□ 0.59
COL5A3P25940 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
COL5A3P25940 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL5A3P25940 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC18.73■□□□□ 0.59
COL5A3P25940 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
COL5A3P25940 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL5A3P25940 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC18.73■□□□□ 0.59
COL5A3P25940 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
COL5A3P25940 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL5A3P25940 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
COL5A3P25940 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC18.73■□□□□ 0.59
COL5A3P25940 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL5A3P25940 WARS-232ENST00000556645 2508 ntTSL 5 BASIC18.72■□□□□ 0.59
COL5A3P25940 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL5A3P25940 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
COL5A3P25940 MAGOH-202ENST00000371470 756 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms