Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AP005117.1-202ENST00000581724 1908 ntBASIC13.09□□□□□ -0.31
USF1P22415 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
USF1P22415 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC13.09□□□□□ -0.31
USF1P22415 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
USF1P22415 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
USF1P22415 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
USF1P22415 AC134312.5-201ENST00000568031 1313 ntBASIC13.09□□□□□ -0.31
USF1P22415 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
USF1P22415 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
USF1P22415 AC134407.2-201ENST00000625089 1978 ntBASIC13.09□□□□□ -0.31
USF1P22415 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
USF1P22415 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC13.09□□□□□ -0.31
USF1P22415 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC13.08□□□□□ -0.31
USF1P22415 AL133338.1-201ENST00000565695 1517 ntBASIC13.08□□□□□ -0.31
USF1P22415 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
USF1P22415 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.31
USF1P22415 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.31
USF1P22415 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC13.08□□□□□ -0.31
USF1P22415 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
USF1P22415 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
USF1P22415 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
USF1P22415 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC13.08□□□□□ -0.32
USF1P22415 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
USF1P22415 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
USF1P22415 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
USF1P22415 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC13.08□□□□□ -0.32
USF1P22415 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
USF1P22415 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
USF1P22415 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
USF1P22415 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
USF1P22415 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
USF1P22415 ZBTB12BP-201ENST00000314232 1122 ntBASIC13.08□□□□□ -0.32
USF1P22415 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
USF1P22415 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC13.08□□□□□ -0.32
USF1P22415 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC13.08□□□□□ -0.32
USF1P22415 MIR1908-201ENST00000410394 80 ntBASIC13.08□□□□□ -0.32
USF1P22415 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC13.08□□□□□ -0.32
USF1P22415 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC13.08□□□□□ -0.32
USF1P22415 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC13.08□□□□□ -0.32
USF1P22415 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
USF1P22415 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC13.08□□□□□ -0.32
USF1P22415 YBX1P6-201ENST00000442962 1002 ntBASIC13.08□□□□□ -0.32
USF1P22415 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC13.08□□□□□ -0.32
USF1P22415 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
USF1P22415 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC13.08□□□□□ -0.32
USF1P22415 KRT18P43-201ENST00000469825 1281 ntBASIC13.08□□□□□ -0.32
USF1P22415 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC13.08□□□□□ -0.32
USF1P22415 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC13.08□□□□□ -0.32
USF1P22415 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
USF1P22415 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC13.08□□□□□ -0.32
USF1P22415 AP000812.2-201ENST00000538934 718 ntBASIC13.08□□□□□ -0.32
USF1P22415 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC13.08□□□□□ -0.32
USF1P22415 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC13.08□□□□□ -0.32
USF1P22415 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
USF1P22415 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
USF1P22415 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
USF1P22415 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
USF1P22415 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
USF1P22415 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
USF1P22415 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC13.08□□□□□ -0.32
USF1P22415 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
USF1P22415 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC13.08□□□□□ -0.32
USF1P22415 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC13.08□□□□□ -0.32
USF1P22415 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
USF1P22415 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC13.08□□□□□ -0.32
USF1P22415 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
USF1P22415 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC13.08□□□□□ -0.32
USF1P22415 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
USF1P22415 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC13.08□□□□□ -0.32
USF1P22415 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
USF1P22415 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
USF1P22415 TICRR-202ENST00000560985 6656 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
USF1P22415 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
USF1P22415 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC13.07□□□□□ -0.32
USF1P22415 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
USF1P22415 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC13.07□□□□□ -0.32
USF1P22415 AC104640.1-201ENST00000562617 2109 ntBASIC13.07□□□□□ -0.32
USF1P22415 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC13.07□□□□□ -0.32
USF1P22415 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
USF1P22415 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
USF1P22415 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
USF1P22415 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC13.07□□□□□ -0.32
USF1P22415 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
USF1P22415 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
USF1P22415 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC13.07□□□□□ -0.32
USF1P22415 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
USF1P22415 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
USF1P22415 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC13.07□□□□□ -0.32
USF1P22415 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC13.07□□□□□ -0.32
USF1P22415 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
USF1P22415 AC092933.1-201ENST00000393644 945 ntBASIC13.07□□□□□ -0.32
USF1P22415 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
USF1P22415 AC012441.1-201ENST00000446669 685 ntBASIC13.07□□□□□ -0.32
USF1P22415 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC13.07□□□□□ -0.32
USF1P22415 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
USF1P22415 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC13.07□□□□□ -0.32
USF1P22415 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC13.07□□□□□ -0.32
USF1P22415 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC13.07□□□□□ -0.32
USF1P22415 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC13.07□□□□□ -0.32
USF1P22415 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC13.07□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 59.4 ms