Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
SPTA1P02549 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SPTA1P02549 OR6A2-201ENST00000332601 1373 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
SPTA1P02549 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SPTA1P02549 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SPTA1P02549 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
SPTA1P02549 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC13.86□□□□□ -0.19
SPTA1P02549 NSUN5P1-203ENST00000422386 972 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
SPTA1P02549 ITGA9-AS1-205ENST00000438136 578 ntTSL 4 BASIC13.86□□□□□ -0.19
SPTA1P02549 FXYD2-205ENST00000528014 672 ntAPPRIS P1 TSL 3 BASIC13.86□□□□□ -0.19
SPTA1P02549 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC13.86□□□□□ -0.19
SPTA1P02549 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC13.86□□□□□ -0.19
SPTA1P02549 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC13.86□□□□□ -0.19
SPTA1P02549 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SPTA1P02549 R3HDM2-204ENST00000402412 4372 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
SPTA1P02549 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC13.86□□□□□ -0.19
SPTA1P02549 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SPTA1P02549 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SPTA1P02549 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC13.86□□□□□ -0.19
SPTA1P02549 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
SPTA1P02549 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC13.86□□□□□ -0.19
SPTA1P02549 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC13.86□□□□□ -0.19
SPTA1P02549 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC13.86□□□□□ -0.19
SPTA1P02549 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SPTA1P02549 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
SPTA1P02549 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SPTA1P02549 CST9L-201ENST00000376979 959 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SPTA1P02549 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
SPTA1P02549 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC13.86□□□□□ -0.19
SPTA1P02549 SERBP1P2-201ENST00000436888 1164 ntBASIC13.86□□□□□ -0.19
SPTA1P02549 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC13.86□□□□□ -0.19
SPTA1P02549 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC13.86□□□□□ -0.19
SPTA1P02549 PTGR1-209ENST00000538962 1200 ntTSL 2 BASIC13.86□□□□□ -0.19
SPTA1P02549 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC13.86□□□□□ -0.19
SPTA1P02549 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SPTA1P02549 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC13.86□□□□□ -0.19
SPTA1P02549 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SPTA1P02549 SCAF11-203ENST00000395453 1336 ntAPPRIS ALT2 TSL 2 BASIC13.86□□□□□ -0.19
SPTA1P02549 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
SPTA1P02549 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC13.86□□□□□ -0.19
SPTA1P02549 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
SPTA1P02549 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC13.86□□□□□ -0.19
SPTA1P02549 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
SPTA1P02549 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SPTA1P02549 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC13.85□□□□□ -0.19
SPTA1P02549 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC13.85□□□□□ -0.19
SPTA1P02549 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
SPTA1P02549 TNNT2-202ENST00000360372 969 ntTSL 5 BASIC13.85□□□□□ -0.19
SPTA1P02549 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
SPTA1P02549 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SPTA1P02549 TNNT2-204ENST00000367317 1050 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
SPTA1P02549 TNNT2-209ENST00000421663 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
SPTA1P02549 AL008733.1-201ENST00000440516 469 ntTSL 3 BASIC13.85□□□□□ -0.19
SPTA1P02549 SOX9-AS1-207ENST00000446332 443 ntTSL 2 BASIC13.85□□□□□ -0.19
SPTA1P02549 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC13.85□□□□□ -0.19
SPTA1P02549 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC13.85□□□□□ -0.19
SPTA1P02549 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SPTA1P02549 IFI27-215ENST00000621160 644 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
SPTA1P02549 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SPTA1P02549 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC13.85□□□□□ -0.19
SPTA1P02549 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SPTA1P02549 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SPTA1P02549 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
SPTA1P02549 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC13.85□□□□□ -0.19
SPTA1P02549 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
SPTA1P02549 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
SPTA1P02549 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC13.85□□□□□ -0.19
SPTA1P02549 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
SPTA1P02549 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
SPTA1P02549 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
SPTA1P02549 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC13.85□□□□□ -0.19
SPTA1P02549 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SPTA1P02549 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC13.85□□□□□ -0.19
SPTA1P02549 AC007787.1-201ENST00000588095 1583 ntBASIC13.85□□□□□ -0.19
SPTA1P02549 KRT8P14-201ENST00000414254 1442 ntBASIC13.85□□□□□ -0.19
SPTA1P02549 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SPTA1P02549 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC13.85□□□□□ -0.19
SPTA1P02549 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SPTA1P02549 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
SPTA1P02549 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SPTA1P02549 POM121L8P-201ENST00000417732 1281 ntBASIC13.85□□□□□ -0.19
SPTA1P02549 POM121L9P-203ENST00000441984 1285 ntBASIC13.85□□□□□ -0.19
SPTA1P02549 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
SPTA1P02549 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
SPTA1P02549 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
SPTA1P02549 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
SPTA1P02549 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC13.85□□□□□ -0.19
SPTA1P02549 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SPTA1P02549 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
SPTA1P02549 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SPTA1P02549 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SPTA1P02549 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
SPTA1P02549 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
SPTA1P02549 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC13.85□□□□□ -0.19
SPTA1P02549 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
SPTA1P02549 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
SPTA1P02549 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SPTA1P02549 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
SPTA1P02549 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SPTA1P02549 ARHGAP45-201ENST00000313093 4273 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms