Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC15.05■□□□□ -0
SIX3O95343 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC15.05■□□□□ -0
SIX3O95343 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC15.05■□□□□ -0
SIX3O95343 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC15.05■□□□□ -0
SIX3O95343 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
SIX3O95343 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC15.05■□□□□ -0
SIX3O95343 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
SIX3O95343 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC15.04■□□□□ -0
SIX3O95343 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
SIX3O95343 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
SIX3O95343 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
SIX3O95343 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC15.04■□□□□ -0
SIX3O95343 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC15.04■□□□□ -0
SIX3O95343 AC005089.1-201ENST00000619486 2241 ntBASIC15.04■□□□□ -0
SIX3O95343 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC15.04■□□□□ -0
SIX3O95343 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
SIX3O95343 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
SIX3O95343 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC15.04■□□□□ -0
SIX3O95343 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC15.04■□□□□ -0
SIX3O95343 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
SIX3O95343 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC15.04■□□□□ -0
SIX3O95343 AC138969.3-201ENST00000546612 1459 ntBASIC15.04■□□□□ -0
SIX3O95343 AC138932.2-201ENST00000548268 1459 ntBASIC15.04■□□□□ -0
SIX3O95343 AC126755.4-201ENST00000549796 1459 ntBASIC15.04■□□□□ -0
SIX3O95343 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC15.04■□□□□ -0
SIX3O95343 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
SIX3O95343 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC15.04■□□□□ -0
SIX3O95343 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC15.04■□□□□ -0
SIX3O95343 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC15.04■□□□□ -0
SIX3O95343 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC15.04■□□□□ -0
SIX3O95343 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC15.04■□□□□ -0
SIX3O95343 AC104457.1-201ENST00000401024 814 ntBASIC15.04■□□□□ -0
SIX3O95343 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC15.04■□□□□ -0
SIX3O95343 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC15.04■□□□□ -0
SIX3O95343 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC15.04■□□□□ -0
SIX3O95343 LY6E-204ENST00000519546 971 ntTSL 2 BASIC15.04■□□□□ -0
SIX3O95343 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC15.04■□□□□ -0
SIX3O95343 AC015911.4-201ENST00000588022 1070 ntBASIC15.04■□□□□ -0
SIX3O95343 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC15.04■□□□□ -0
SIX3O95343 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
SIX3O95343 RAB34-223ENST00000636154 730 ntTSL 2 BASIC15.04■□□□□ -0
SIX3O95343 UCKL1-AS1-201ENST00000623569 3602 ntBASIC15.04■□□□□ -0
SIX3O95343 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC15.04■□□□□ -0
SIX3O95343 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
SIX3O95343 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC15.04■□□□□ -0
SIX3O95343 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC15.04■□□□□ -0
SIX3O95343 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
SIX3O95343 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC15.04■□□□□ -0
SIX3O95343 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC15.04■□□□□ -0
SIX3O95343 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC15.04■□□□□ -0
SIX3O95343 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
SIX3O95343 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC15.04■□□□□ -0
SIX3O95343 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
SIX3O95343 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
SIX3O95343 AC117489.1-201ENST00000625169 3217 ntBASIC15.04■□□□□ -0
SIX3O95343 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
SIX3O95343 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
SIX3O95343 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
SIX3O95343 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC15.03■□□□□ -0
SIX3O95343 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
SIX3O95343 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
SIX3O95343 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC15.03■□□□□ -0
SIX3O95343 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
SIX3O95343 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC15.03■□□□□ -0
SIX3O95343 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC15.03■□□□□ -0
SIX3O95343 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
SIX3O95343 ZBTB45P1-201ENST00000452761 1456 ntBASIC15.03■□□□□ -0
SIX3O95343 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
SIX3O95343 AC100757.3-201ENST00000622361 1406 ntBASIC15.03■□□□□ -0
SIX3O95343 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
SIX3O95343 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
SIX3O95343 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
SIX3O95343 GOLGA8DP-202ENST00000341390 2184 ntBASIC15.03■□□□□ -0
SIX3O95343 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
SIX3O95343 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
SIX3O95343 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
SIX3O95343 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC15.03■□□□□ -0
SIX3O95343 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC15.03■□□□□ -0
SIX3O95343 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
SIX3O95343 HNRNPA3P1-201ENST00000401429 1139 ntBASIC15.03■□□□□ -0
SIX3O95343 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC15.03■□□□□ -0
SIX3O95343 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC15.03■□□□□ -0
SIX3O95343 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
SIX3O95343 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
SIX3O95343 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC15.03■□□□□ -0
SIX3O95343 HNRNPA3P5-201ENST00000455201 833 ntBASIC15.03■□□□□ -0
SIX3O95343 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC15.03■□□□□ -0
SIX3O95343 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC15.03■□□□□ -0
SIX3O95343 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC15.03■□□□□ -0
SIX3O95343 RAB35-202ENST00000534951 939 ntTSL 2 BASIC15.03■□□□□ -0
SIX3O95343 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
SIX3O95343 RPL28-205ENST00000558131 444 ntTSL 5 BASIC15.03■□□□□ -0
SIX3O95343 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC15.03■□□□□ -0
SIX3O95343 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC15.03■□□□□ -0
SIX3O95343 LSM12-202ENST00000585388 942 ntTSL 3 BASIC15.03■□□□□ -0
SIX3O95343 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC15.03■□□□□ -0
SIX3O95343 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC15.03■□□□□ -0
SIX3O95343 TEX48-202ENST00000612244 662 ntTSL 3 BASIC15.03■□□□□ -0
SIX3O95343 AC004461.2-201ENST00000629517 803 ntBASIC15.03■□□□□ -0
SIX3O95343 AL645728.2-202ENST00000641679 227 ntBASIC15.03■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms