Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
SHOX2O60902 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
SHOX2O60902 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC15.38■□□□□ 0.05
SHOX2O60902 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
SHOX2O60902 FGFR3P6-201ENST00000457012 610 ntBASIC15.38■□□□□ 0.05
SHOX2O60902 RNF146-204ENST00000476956 884 ntTSL 2 BASIC15.38■□□□□ 0.05
SHOX2O60902 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
SHOX2O60902 AL031432.2-201ENST00000566714 459 ntBASIC15.38■□□□□ 0.05
SHOX2O60902 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC15.38■□□□□ 0.05
SHOX2O60902 AL928711.1-201ENST00000570165 459 ntBASIC15.38■□□□□ 0.05
SHOX2O60902 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC15.38■□□□□ 0.05
SHOX2O60902 AL645728.2-201ENST00000641974 660 ntBASIC15.38■□□□□ 0.05
SHOX2O60902 TJAP1-208ENST00000438588 2716 ntTSL 5 BASIC15.38■□□□□ 0.05
SHOX2O60902 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
SHOX2O60902 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
SHOX2O60902 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
SHOX2O60902 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
SHOX2O60902 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC15.38■□□□□ 0.05
SHOX2O60902 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC15.38■□□□□ 0.05
SHOX2O60902 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC15.38■□□□□ 0.05
SHOX2O60902 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
SHOX2O60902 CRACR2A-203ENST00000440314 2697 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
SHOX2O60902 POLD1-214ENST00000613923 3542 ntTSL 5 BASIC15.38■□□□□ 0.05
SHOX2O60902 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
SHOX2O60902 CCT2-201ENST00000299300 2041 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
SHOX2O60902 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
SHOX2O60902 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC15.38■□□□□ 0.05
SHOX2O60902 TASP1-201ENST00000337743 2352 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
SHOX2O60902 TOE1-201ENST00000372090 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
SHOX2O60902 CEP70-201ENST00000264982 2732 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
SHOX2O60902 PRCP-201ENST00000313010 3090 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
SHOX2O60902 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC15.37■□□□□ 0.05
SHOX2O60902 AMT-201ENST00000273588 2280 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
SHOX2O60902 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC15.37■□□□□ 0.05
SHOX2O60902 ESPN-201ENST00000377828 3531 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
SHOX2O60902 GNAO1-214ENST00000638705 3529 ntAPPRIS P5 TSL 1 (best) BASIC15.37■□□□□ 0.05
SHOX2O60902 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
SHOX2O60902 CCDC117-202ENST00000421503 3766 ntTSL 2 BASIC15.37■□□□□ 0.05
SHOX2O60902 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
SHOX2O60902 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
SHOX2O60902 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
SHOX2O60902 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC15.37■□□□□ 0.05
SHOX2O60902 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
SHOX2O60902 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC15.37■□□□□ 0.05
SHOX2O60902 MSRA-206ENST00000521209 814 ntTSL 3 BASIC15.37■□□□□ 0.05
SHOX2O60902 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC15.37■□□□□ 0.05
SHOX2O60902 PAM16-208ENST00000573553 722 ntTSL 2 BASIC15.37■□□□□ 0.05
SHOX2O60902 OR7E47P-204ENST00000575924 449 ntBASIC15.37■□□□□ 0.05
SHOX2O60902 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
SHOX2O60902 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC15.37■□□□□ 0.05
SHOX2O60902 C12orf43-202ENST00000445832 2397 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
SHOX2O60902 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
SHOX2O60902 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
SHOX2O60902 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC15.37■□□□□ 0.05
SHOX2O60902 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
SHOX2O60902 ABCB9-203ENST00000346530 3399 ntTSL 5 BASIC15.37■□□□□ 0.05
SHOX2O60902 NR3C1-201ENST00000231509 3556 ntAPPRIS ALT1 TSL 1 (best) BASIC15.37■□□□□ 0.05
SHOX2O60902 MAGED4B-211ENST00000497164 2482 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
SHOX2O60902 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC15.37■□□□□ 0.05
SHOX2O60902 LDLRAD2-201ENST00000344642 4012 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
SHOX2O60902 AL359643.2-201ENST00000606227 3273 ntTSL 2 BASIC15.37■□□□□ 0.05
SHOX2O60902 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
SHOX2O60902 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
SHOX2O60902 AGBL2-205ENST00000528244 2929 ntAPPRIS ALT2 TSL 2 BASIC15.37■□□□□ 0.05
SHOX2O60902 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
SHOX2O60902 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
SHOX2O60902 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
SHOX2O60902 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
SHOX2O60902 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC15.36■□□□□ 0.05
SHOX2O60902 PCDHGB7-202ENST00000612073 2785 ntAPPRIS ALT2 BASIC15.36■□□□□ 0.05
SHOX2O60902 ZNF721-205ENST00000511833 2966 ntAPPRIS P1 TSL 4 BASIC15.36■□□□□ 0.05
SHOX2O60902 BRSK1-206ENST00000590333 2977 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
SHOX2O60902 AC011298.1-201ENST00000407635 3398 ntTSL 2 BASIC15.36■□□□□ 0.05
SHOX2O60902 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SHOX2O60902 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SHOX2O60902 MYOM3-201ENST00000338909 2693 ntTSL 2 BASIC15.36■□□□□ 0.05
SHOX2O60902 PFKP-203ENST00000381125 2654 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SHOX2O60902 AC111170.3-201ENST00000624282 2464 ntBASIC15.36■□□□□ 0.05
SHOX2O60902 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
SHOX2O60902 CELF4-201ENST00000334919 3542 ntAPPRIS ALT1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SHOX2O60902 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
SHOX2O60902 C1QTNF1-203ENST00000354124 2714 ntAPPRIS P1 TSL 4 BASIC15.36■□□□□ 0.05
SHOX2O60902 CD34-203ENST00000367036 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
SHOX2O60902 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC15.36■□□□□ 0.05
SHOX2O60902 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC15.36■□□□□ 0.05
SHOX2O60902 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SHOX2O60902 CCDC126-202ENST00000409765 2324 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SHOX2O60902 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
SHOX2O60902 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
SHOX2O60902 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC15.36■□□□□ 0.05
SHOX2O60902 PRYP6-201ENST00000514804 343 ntBASIC15.36■□□□□ 0.05
SHOX2O60902 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
SHOX2O60902 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC15.36■□□□□ 0.05
SHOX2O60902 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC15.36■□□□□ 0.05
SHOX2O60902 AC008667.4-201ENST00000607370 168 ntBASIC15.36■□□□□ 0.05
SHOX2O60902 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC15.36■□□□□ 0.05
SHOX2O60902 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC15.36■□□□□ 0.05
SHOX2O60902 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC15.36■□□□□ 0.05
SHOX2O60902 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
SHOX2O60902 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms