Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC13.15□□□□□ -0.3
SDCBPO00560 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SDCBPO00560 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
SDCBPO00560 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
SDCBPO00560 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
SDCBPO00560 RPSAP43-201ENST00000402237 625 ntBASIC13.15□□□□□ -0.3
SDCBPO00560 AC211486.1-202ENST00000416371 468 ntBASIC13.15□□□□□ -0.3
SDCBPO00560 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC13.15□□□□□ -0.3
SDCBPO00560 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC13.15□□□□□ -0.3
SDCBPO00560 RBPMS2P1-201ENST00000437762 623 ntBASIC13.15□□□□□ -0.3
SDCBPO00560 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC13.15□□□□□ -0.3
SDCBPO00560 AC211476.1-201ENST00000503899 468 ntBASIC13.15□□□□□ -0.3
SDCBPO00560 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC13.15□□□□□ -0.3
SDCBPO00560 DHDH-204ENST00000523250 634 ntTSL 5 BASIC13.15□□□□□ -0.3
SDCBPO00560 COQ9-214ENST00000567933 882 ntTSL 3 BASIC13.15□□□□□ -0.3
SDCBPO00560 AC003101.2-201ENST00000612557 442 ntBASIC13.15□□□□□ -0.3
SDCBPO00560 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
SDCBPO00560 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC13.15□□□□□ -0.3
SDCBPO00560 BANP-203ENST00000393207 2438 ntTSL 2 BASIC13.15□□□□□ -0.3
SDCBPO00560 IL17RA-204ENST00000612619 8506 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
SDCBPO00560 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SDCBPO00560 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
SDCBPO00560 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC13.15□□□□□ -0.3
SDCBPO00560 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
SDCBPO00560 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC13.15□□□□□ -0.3
SDCBPO00560 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
SDCBPO00560 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
SDCBPO00560 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
SDCBPO00560 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC13.15□□□□□ -0.3
SDCBPO00560 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC13.15□□□□□ -0.3
SDCBPO00560 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
SDCBPO00560 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SDCBPO00560 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SDCBPO00560 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
SDCBPO00560 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC13.15□□□□□ -0.31
SDCBPO00560 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.31
SDCBPO00560 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.31
SDCBPO00560 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.31
SDCBPO00560 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.31
SDCBPO00560 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.31
SDCBPO00560 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
SDCBPO00560 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
SDCBPO00560 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
SDCBPO00560 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
SDCBPO00560 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
SDCBPO00560 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC13.14□□□□□ -0.31
SDCBPO00560 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC13.14□□□□□ -0.31
SDCBPO00560 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
SDCBPO00560 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
SDCBPO00560 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
SDCBPO00560 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
SDCBPO00560 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
SDCBPO00560 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC13.14□□□□□ -0.31
SDCBPO00560 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC13.14□□□□□ -0.31
SDCBPO00560 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
SDCBPO00560 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
SDCBPO00560 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC13.14□□□□□ -0.31
SDCBPO00560 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
SDCBPO00560 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC13.14□□□□□ -0.31
SDCBPO00560 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC13.14□□□□□ -0.31
SDCBPO00560 FAM58DP-201ENST00000428076 619 ntBASIC13.14□□□□□ -0.31
SDCBPO00560 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
SDCBPO00560 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC13.14□□□□□ -0.31
SDCBPO00560 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC13.14□□□□□ -0.31
SDCBPO00560 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC13.14□□□□□ -0.31
SDCBPO00560 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC13.14□□□□□ -0.31
SDCBPO00560 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC13.14□□□□□ -0.31
SDCBPO00560 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC13.14□□□□□ -0.31
SDCBPO00560 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC13.14□□□□□ -0.31
SDCBPO00560 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
SDCBPO00560 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
SDCBPO00560 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC13.14□□□□□ -0.31
SDCBPO00560 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC13.14□□□□□ -0.31
SDCBPO00560 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
SDCBPO00560 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC13.14□□□□□ -0.31
SDCBPO00560 AC018529.1-201ENST00000613063 361 ntBASIC13.14□□□□□ -0.31
SDCBPO00560 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC13.14□□□□□ -0.31
SDCBPO00560 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
SDCBPO00560 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
SDCBPO00560 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
SDCBPO00560 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC13.14□□□□□ -0.31
SDCBPO00560 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
SDCBPO00560 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
SDCBPO00560 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
SDCBPO00560 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
SDCBPO00560 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
SDCBPO00560 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC13.14□□□□□ -0.31
SDCBPO00560 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
SDCBPO00560 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
SDCBPO00560 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
SDCBPO00560 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
SDCBPO00560 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
SDCBPO00560 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC13.14□□□□□ -0.31
SDCBPO00560 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
SDCBPO00560 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC13.14□□□□□ -0.31
SDCBPO00560 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC13.14□□□□□ -0.31
SDCBPO00560 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
SDCBPO00560 AMT-204ENST00000427987 1646 ntTSL 5 BASIC13.13□□□□□ -0.31
SDCBPO00560 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC13.13□□□□□ -0.31
SDCBPO00560 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 69.9 ms